Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000831

染色体: Chr02 坐标: 14087237-14090162 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000831
名称SmilChr02G000831
描述uncharacterized SmilChr02G000831
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向14087237 - 14090162 / -

ID 对照

NCBI Gene IDLOC131011296
GeneID131011296
locus_tag-
NCBI NameLOC131011296
原始查询LOC131011296

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817]; symbol=AT2G32560; hit=AT2G32560; species=arabidopsis; confidence=weak
产物F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817]; symbol=AT2G32560; hit=AT2G32560; species=arabidopsis; confidence=weak
ArabidopsisAT2G32560 (AT2G32560)
F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817]
identity=70; qcov=0.254; evalue=1.25e-08; confidence=weak
RiceOs01g0281000 (OsFbox006)
-
identity=69; qcov=0.246; evalue=2.97e-07; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131011296

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057795060.1
2 Nucleus 细胞核 0.60000 XP_057795065.1
3 Cytoplasm 细胞质 0.60000 XP_057795065.1
4 Endoplasmic reticulum 内质网 0.40000 XP_057795062.1
5 Lipid droplet 脂滴 0.20000 XP_057795061.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:14087381 AT A 1bp_deletion frameshift_variant 100 A10,A11,A14,A16,A2,A22,A3,A4,A5,A7,A8,A9,B10,B104,B106,B107,B108,B11,B120,B124,B125,B129,B13,B131,B133,B135,B138,B140,B15,B18,B21,B25,B27,B33,B37,B44,B46,B47,B48,B52,B53,B56,B57,B59,B6,B60,B64,B70,B71,B72,B76,B78,B79,B8,B80,B85,B9,B90,B95,B96,B99,C10,C11,C13,C14,C16,C17,C18,C21,C25,C27,C29,C3,C34,C37,C39,C4,C41,C42,C44,C58,C60,C61,C63,C67,C68,C69,C71,C73,C74,C76,C79,C80,C83,C84,C87,C9,D7,D8,D9
Chr2:14087411 C T EMS_canonical_SNV CDS_variant 2 B23,B50
Chr2:14087412 C T EMS_canonical_SNV CDS_variant 2 B119,D3
Chr2:14087435 C T EMS_canonical_SNV CDS_variant 5 B119,B65,C11,C69,D3
Chr2:14087563 AT A 1bp_deletion frameshift_variant 6 A19,B130,B5,B73,C75,C79
Chr2:14087641 CA C 1bp_deletion frameshift_variant 6 A9,B105,B122,B26,C24,C68
Chr2:14087645 TG T 1bp_deletion frameshift_variant 6 A9,B105,B122,B26,C24,C68
Chr2:14087650 CA C 1bp_deletion frameshift_variant 3 B28,B70,C62
Chr2:14087650 CA C 1bp_deletion CDS_variant 3 B28,B70,C62
Chr2:14087664 C T EMS_canonical_SNV CDS_variant 3 B71,C4,C71
Chr2:14087673 G A EMS_canonical_SNV stop_gained 12 A11,A13,B60,B63,B80,B87,C15,C35,C37,C41,C51,C75
Chr2:14087685 CG C 1bp_deletion frameshift_variant 3 B55,C23,C31

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XR_009096848.1
TCAATTTCAAAATCAAAAATCTTATTTTTCCCTCTCTTTCTTTCATCTGACGCTCTCTATCTCTCTTTCACGTCTTTCTCCTTCTTCCTTCTCCGGCGATTTCGCTGGTTCTCGCCGCCTCCGGCGCGACGAGGATCGTGGTGGTTCTTCCCCTTTATCGTTTTCGACTTATCCACCGGTGCCACCGTCTGTATCTCTCTCCCCACTCGTAATTCTCAATTCAGACCACACATCCCCCAAAGGTTACTCTCTCTGTCGTT...
XM_057939080.1
TCAATTTCAAAATCAAAAATCTTATTTTTCCCTCTCTTTCTTTCATCTGACGCTCTCTATCTCTCTTTCACGTCTTTCTCCTTCTTCCTTCTCCGGCGATTTCGCTGGTTCTCGCCGCCTCCGGCGCGACGAGGATCGTGGTGGTTCTTCCCCTTTATCGTTTTCGACTTATCCACCGGTGCCACCGTCTGTATCTCTCTCCCCACTCGTAATTCTCAATTCAGACCACACATCCCCCAAAGGTTACTCTCTCTGTCGTT...

CDS

6 records

下载 CDS FASTA
LOC131011296
ATGCGATTCAAGCTTTCATTTCCCGGTGGAAGCTTCGAGACATGGTCAGAAAACCTAGCTCTAGCATCTTTTGGAGGTATGATTCCCTTTCAAAATTCTTCGTCTCTCACCACCTCTCCCGCAGCGATTCTATTGCTAGCCTCGCTGTTAAGTATCCTGTTCAGGAATCCGAAGAACTCACATCATCTACACAATGGAGTTGTGCAGCAATATATACAGCAAATCAAGCATCTGGAATCTGAACAAACTTCATCAATATC...
LOC131011296
ATGCGATTCAAGCTTTCATTTCCCGGTGGAAGCTTCGAGACATGGTCAGAAAACCTAGCTCTAGCATCTTTTGGAGGTATGATTCCCTTTCAAAATTCTTCGTCTCTCACCACCTCTCCCGCAGCGATTCTATTGCTAGCCTCGCTGTTAAGTATCCTGTTCAGGAATCCGAAGAACTCACATCATCTACACAATGGAGTTGTGCAGCAATATATACAGCAAATCAAGCATCTGGAATCTGAACAAACTTCATCAATATC...

Protein

6 records

下载 Protein FASTA
XP_057795060.1
MRFKLSFPGGSFETWSENLALASFGGMIPFQNSSSLTTSPAAILLLASLLSILFRNPKNSHHLHNGVVQQYIQQIKHLESEQTSSISKANWVLKEQRSWRQVRDFFGWMKLQNGHVGFMLSCYDAQLSYGSTSDNFVARYKNLLYKNVLSKSIYIHLLCKLLKISIIS
XP_057795061.1
MRFKLSFPGGSFETWSENLALASFGGMIPFQNSSSLTTSPAAILLLASLLSILFRNPKNSHHLHNGVVQQYIQQIKHLESEQTSSISKANWVLKEQRSWRQVRDFFGWMKLQNGHVGFMLSCYDAQLSYGSTSDNFVARYKNLLYKNVLSTLAVHGSIEWC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器