Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000851`

染色体: Chr02 坐标: 14436538-14448277 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000851`
名称	SmilChr02G000851
描述	uncharacterized SmilChr02G000851
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	14436538 - 14448277 / `-`

ID 对照

NCBI Gene ID	`LOC131011316`
GeneID	`131011316`
locus_tag	`-`
NCBI Name	`LOC131011316`
原始查询	`LOC131011316`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GTP-binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842056]; symbol=AT1G56050; hit=AT1G56050; species=arabidopsis; confidence=high
产物	GTP-binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842056]; symbol=AT1G56050; hit=AT1G56050; species=arabidopsis; confidence=high
Arabidopsis	`AT1G56050` (AT1G56050) GTP-binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842056] identity=79.5; qcov=0.91; evalue=0; confidence=high
Rice	`Os08g0199300` (OsYchF1) - identity=42; qcov=0.882; evalue=2.16e-93; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF01926 (MMR_HSR1); PF06071 (YchF-GTPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131011316

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057795082.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057795082.1`
3	Mitochondrion	线粒体	0.20000	`XP_057795083.1`
4	Nucleus	细胞核	0.00000	`XP_057795082.1`
5	Chromosome	染色体	0.00000	`XP_057795082.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:14440934`	`TG`	`T`	1bp_deletion	frameshift_variant	10	B131,B140,B34,B41,B42,B43,B61,B73,B81,C50
`Chr2:14441025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B32,B99,C22,C87
`Chr2:14441033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,B83,C58
`Chr2:14441037`	`G`	`A`	EMS_canonical_SNV	stop_gained	84	A10,A11,A13,A14,A16,A24,A25,A4,A5,A6,B1,B103,B105,B111,B113,B118,B119,B12,B123,B128,B129,B13,B130,B132,B133,B134,B136,B137,B139,B15,B17,B31,B36,B38,B42,B43,B45,B47,B51,B53,B55,B6,B61,B66,B69,B7,B73,B74,B75,B78,B82,B85,B90,B92,C11,C12,C14,C20,C23,C25,C27,C29,C3,C33,C38,C39,C41,C42,C43,C47,C49,C51,C58,C63,C64,C65,C67,C69,C7,C72,C81,C87,D7,D8
`Chr2:14441065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr2:14441537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr2:14444787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:14444975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:14446626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B11,C42,C45
`Chr2:14447055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:14447286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B136,B55,B94
`Chr2:14447959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B136,B55,B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795082.1

439 aa

220

439

MMR_HSR1

YchF-GTPase_C

PF01926 MMR_HSR1 59-164 aa PF06071 YchF-GTPase_C 340-404 aa

XP_057795083.1

424 aa

212

424

MMR_HSR1

YchF-GTPase_C

PF01926 MMR_HSR1 59-164 aa PF06071 YchF-GTPase_C 340-423 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795082.1`	Pfam	`PF01926`	MMR_HSR1	Family	59	164	4.9e-21	75.7	50S ribosome-binding GTPase
`XP_057795082.1`	Pfam	`PF06071`	YchF-GTPase_C	Domain	340	404	4.8e-26	91.4	Protein of unknown function (DUF933)
`XP_057795083.1`	Pfam	`PF01926`	MMR_HSR1	Family	59	164	4.5e-21	75.8	50S ribosome-binding GTPase
`XP_057795083.1`	Pfam	`PF06071`	YchF-GTPase_C	Domain	340	423	9.8e-38	128.9	Protein of unknown function (DUF933)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939100.1
TTTTCTTTCTCCCAATGTTAAAAAATGTTAATTTTACTAATTGACAGAAAATTTTATCAGGAAGACGAAGAAAGAAACATACACACTAATACCACAGCCCACCACAAAACCTCTTCGTTTGCTGGAGAGCTCTTCATCATTAATGTCGAGAATAATTCTGAGCCCTCATTTGATTCCTTCAGTATCATCAGCATCATTATCTGTTGCTCACAAGTTTCCTATCCTATTCCAATGGCCGCATCTCTCCAAACCCCCTCTGT...

XM_057939099.1
TTTTCTTTCTCCCAATGTTAAAAAATGTTAATTTTACTAATTGACAGAAAATTTTATCAGGAAGACGAAGAAAGAAACATACACACTAATACCACAGCCCACCACAAAACCTCTTCGTTTGCTGGAGAGCTCTTCATCATTAATGTCGAGAATAATTCTGAGCCCTCATTTGATTCCTTCAGTATCATCAGCATCATTATCTGTTGCTCACAAGTTTCCTATCCTATTCCAATGGCCGCATCTCTCCAAACCCCCTCTGT...

CDS

2 records

下载 CDS FASTA

LOC131011316
ATGTCGAGAATAATTCTGAGCCCTCATTTGATTCCTTCAGTATCATCAGCATCATTATCTGTTGCTCACAAGTTTCCTATCCTATTCCAATGGCCGCATCTCTCCAAACCCCCTCTGTCGACGCTCTTATTCAGCCGCCGCTTCTCCGCCGCCAAGATAAGCATGAGCTTGCGAGCCGGCATTGTTGGTCTCCCCAACGTCGGCAAGTCCACTCTCTTCAACGCCGTTGTTGAAAATGGAAAGGCTCAGGCTGCAAATTT...

Protein

2 records

下载 Protein FASTA

XP_057795082.1
MSRIILSPHLIPSVSSASLSVAHKFPILFQWPHLSKPPLSTLLFSRRFSAAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLNVLSELSKSQRGVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVSGKVDPKSDIDVINLELVFSDVDQVEKRLDKLRKGKAKDTQSKMKEEAEKSALEKIEKALMDGKPARSVSLTDFEKDAVRHLCLLTMKPV...

XP_057795083.1
MSRIILSPHLIPSVSSASLSVAHKFPILFQWPHLSKPPLSTLLFSRRFSAAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLNVLSELSKSQRGVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVSGKVDPKSDIDVINLELVFSDVDQVEKRLDKLRKGKAKDTQSKMKEEAEKSALEKIEKALMDGKPARSVSLTDFEKDAVRHLCLLTMKPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器