Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000925`

染色体: Chr02 坐标: 16073648-16081123 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000925`
名称	SmilChr02G000925
描述	C2 and GRAM domain-containing protein At1g03370-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16073648 - 16081123 / `+`

ID 对照

NCBI Gene ID	`LOC131011362`
GeneID	`131011362`
locus_tag	`-`
NCBI Name	`LOC131011362`
原始查询	`LOC131011362`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	C2 and GRAM domain-containing protein At1g03370-like
产物	C2 and GRAM domain-containing protein At1g03370-like
Arabidopsis	`AT1G03370` (AT1G03370) C2 calcium/lipid-binding and GRAM domain containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839519] identity=57.1; qcov=1; evalue=0; confidence=high
Rice	`Os06g0297800` - identity=52.3; qcov=0.957; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00168 (C2); PF02893 (GRAM); PF16016 (VASt)
InterPro	-
eggNOG	-
NR	GeneID:131011362

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057795143.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057795143.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057795144.1`
4	Nucleus	细胞核	0.00000	`XP_057795143.1`
5	Chromosome	染色体	0.00000	`XP_057795143.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16075284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:16075807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B56,B96
`Chr2:16076278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,C74,C9
`Chr2:16077369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:16078064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,C74,C9
`Chr2:16078093`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B102
`Chr2:16078093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:16078118`	`G`	`A`	EMS_canonical_SNV	stop_gained	151	A1,A11,A15,A16,A20,A21,A23,A24,A3,A4,A5,A8,A9,B1,B100,B102,B103,B104,B105,B106,B107,B11,B110,B111,B113,B115,B117,B118,B12,B120,B121,B123,B124,B126,B131,B133,B134,B135,B137,B138,B139,B14,B140,B16,B17,B18,B19,B20,B21,B22,B23,B24,B27,B29,B3,B30,B31,B32,B33,B35,B36,B38,B4,B41,B46,B48,B49,B50,B51,B53,B55,B56,B57,B58,B61,B62,B63,B64,B66,B67,B68,B7,B70,B71,B72,B75,B78,B79,B81,B82,B83,B86,B9,B94,B95,B96,B97,B99,C11,C12,C13,C14,C15,C19,C2,C22,C24,C25,C27,C28,C29,C3,C31,C32,C33,C34,C35,C37,C40,C42,C45,C46,C48,C49,C52,C55,C56,C57,C59,C6,C60,C62,C65,C68,C69,C72,C73,C74,C77,C79,C8,C80,C81,C82,C85,C87,D1,D5,D6,D7,D9
`Chr2:16078139`	`A`	`ACC`	2bp_insertion	frameshift_variant	2	A9,B105
`Chr2:16078139`	`A`	`ACC`	2bp_insertion	CDS_variant	2	A9,B105
`Chr2:16078206`	`A`	`AG`	1bp_insertion	frameshift_variant	11	B130,B134,B28,B65,C23,C37,C73,C80,C85,D11,D5
`Chr2:16078225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795143.1

1060 aa

530

1060

VASt

GRAM

VASt

PF00168 C2 3-104 aa PF16016 VASt 260-408 aa PF00168 C2 543-645 aa PF02893 GRAM 697-778 aa PF16016 VASt 897-1032 aa

XP_057795144.1

931 aa

466

931

VASt

GRAM

VASt

PF16016 VASt 131-279 aa PF00168 C2 414-516 aa PF02893 GRAM 568-649 aa PF16016 VASt 768-903 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795143.1`	Pfam	`PF00168`	C2	Domain	3	104	2.4e-39	134.4	C2 domain
`XP_057795143.1`	Pfam	`PF16016`	VASt	Domain	260	408	4.3e-57	193.4	VAD1 Analog of StAR-related lipid transfer domain
`XP_057795143.1`	Pfam	`PF00168`	C2	Domain	543	645	2.4e-39	134.4	C2 domain
`XP_057795143.1`	Pfam	`PF02893`	GRAM	Domain	697	778	4.8e-18	65.8	GRAM domain
`XP_057795143.1`	Pfam	`PF16016`	VASt	Domain	897	1032	4.3e-57	193.4	VAD1 Analog of StAR-related lipid transfer domain
`XP_057795144.1`	Pfam	`PF16016`	VASt	Domain	131	279	3e-57	193.9	VAD1 Analog of StAR-related lipid transfer domain
`XP_057795144.1`	Pfam	`PF00168`	C2	Domain	414	516	1.5e-14	54.8	C2 domain
`XP_057795144.1`	Pfam	`PF02893`	GRAM	Domain	568	649	4.2e-18	65.9	GRAM domain
`XP_057795144.1`	Pfam	`PF16016`	VASt	Domain	768	903	3e-57	193.9	VAD1 Analog of StAR-related lipid transfer domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939160.1
AAAAAAAGAAAAAAAGAAAAAAGAAAAAGGGAATTGCATCTGAAGACTTTGCATGCGTTTTCTCCAACTTCAACTACGTTTCCCCCCTCTTCTCTCTCTTCCTCTCTCTCCAACTTACGTAGGAGAACAAAATCAATTCCAGATACCCAGTAATTCAAATCCCAGCATTTCCTTAAATATAGGCATTGCGAATTACTAGATTTTATCTGCATTCTTGATCACGAGATATATAGATTTGATAATTAACGTGCCTCTGCCAT...

XM_057939161.1
TGTTTCAATAATGACTTTGTTGGGCAAATCAAAGTGCCCGTAGCTTGGGTTTTCGAAGCCAAGGATCAGTCTCTTGGCACTGCTTGGTACACTCTGCATCCTAAGAGCAGGAATGCCAAGAACAAGGAATGTGGGGTTGCAGAAGTCTTGATATGGCTAGTTATCTTATCTCCAGATTGACGTTGCTTTGTTTTTCTACTAGGCGAAATTCTTCTCACCATTTGTTTGTTGCAAAAGAATATGCCATTAGACGTGCCTCC...

CDS

2 records

下载 CDS FASTA

LOC131011362
ATGAACCTTTTGGTCCGCGTAAGCGAAGCAAAAAATTTACCTGCGATGGAGTCGAACGGCTTTACCAATCCGTATGTTAAGCTAGAATTGGGGCGGCAAGCGTTCAGGAGCAAAGCTGTGAAGAAATGCTTGAATCCGTCGTGGTCCGAGGAATTCATATTAAAAGTTGATGACTTGAAGAGAAAGCTTGTTGTATCTGTTTTAGATGAAGAAAGGTGTTTCAATAATGACTTTGTTGGGCAAATCAAAGTGCCCGTAGC...

LOC131011362
ATGCCATTAGACGTGCCTCCTACCAGTGATTCTGTAATGTTGTCAAGGAAATATGCTGATTCTCAGCACGATTCACCCTCAATCTCAATGTCTTCCTCAATGGCATCTTCTCCTATGAGGTTTGAGGAAGAAGTCCCGTCTAAGGAGGAAAAGGTTAATGCACCAACATTAGCTGGTCGGATTGCAAAAATTTTCAATAAGAATATAGAGACAACATCCATTAGCTCTATTGAAACAAGTGATGTGTCAGAGGCTGAAAG...

Protein

2 records

下载 Protein FASTA

XP_057795143.1
MNLLVRVSEAKNLPAMESNGFTNPYVKLELGRQAFRSKAVKKCLNPSWSEEFILKVDDLKRKLVVSVLDEERCFNNDFVGQIKVPVAWVFEAKDQSLGTAWYTLHPKSRNAKNKECGEILLTICLLQKNMPLDVPPTSDSVMLSRKYADSQHDSPSISMSSSMASSPMRFEEEVPSKEEKVNAPTLAGRIAKIFNKNIETTSISSIETSDVSEAESIDSVSLERKFGEPSSSVDFEELMRSLETREQSGEVPSCLPGGVV...

XP_057795144.1
MPLDVPPTSDSVMLSRKYADSQHDSPSISMSSSMASSPMRFEEEVPSKEEKVNAPTLAGRIAKIFNKNIETTSISSIETSDVSEAESIDSVSLERKFGEPSSSVDFEELMRSLETREQSGEVPSCLPGGVVLDRLYAIAPRELNSLLFSPDSSFFKSLVDMQGSTDLQVRAWEFNNNGDSLKRTVSYIKPPTKLVKALKATEEQTYLKAKGGTYVVLVVVSTLDAPYGKTFKIELLYCITPGPEQPSGEQSSQLVVSWRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器