Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000926`

染色体: Chr02 坐标: 16103296-16108705 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000926`
名称	SmilChr02G000926
描述	BTB/POZ domain-containing protein At5g47800-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16103296 - 16108705 / `+`

ID 对照

NCBI Gene ID	`LOC131011363`
GeneID	`131011363`
locus_tag	`-`
NCBI Name	`LOC131011363`
原始查询	`LOC131011363`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ domain-containing protein At5g47800-like
产物	BTB/POZ domain-containing protein At5g47800-like
Arabidopsis	`AT5G47800` (AT5G47800) Phototropic-responsive NPH3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:834831] identity=55.8; qcov=0.883; evalue=0; confidence=high
Rice	`Os03g0205700` - identity=42.1; qcov=0.922; evalue=2.32e-128; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF03000 (NPH3)
InterPro	-
eggNOG	-
NR	GeneID:131011363

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057795145.1`
2	Nucleus	细胞核	0.40000	`XP_057795145.1`
3	Cytosol	细胞质基质	0.40000	`XP_057795145.1`
4	Chromosome	染色体	0.00000	`XP_057795145.1`
5	Centromere	着丝粒	0.00000	`XP_057795145.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16104832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,C30,D8
`Chr2:16104857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:16104886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:16104899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr2:16105036`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:16105105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,C9,D10
`Chr2:16107239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr2:16107362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,C9,D10,D3
`Chr2:16107431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:16107456`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B33
`Chr2:16107456`	`TC`	`T`	1bp_deletion	CDS_variant	1	B33
`Chr2:16107498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795145.1

538 aa

269

538

NPH3

PF03000 NPH3 199-424 aa

XP_057795146.1

538 aa

269

538

NPH3

PF03000 NPH3 199-424 aa

XP_057795147.1

538 aa

269

538

NPH3

PF03000 NPH3 199-424 aa

XP_057795148.1

538 aa

269

538

NPH3

PF03000 NPH3 199-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795145.1`	Pfam	`PF03000`	NPH3	Family	199	424	5.5e-70	236.7	NPH3 family
`XP_057795146.1`	Pfam	`PF03000`	NPH3	Family	199	424	5.5e-70	236.7	NPH3 family
`XP_057795147.1`	Pfam	`PF03000`	NPH3	Family	199	424	5.5e-70	236.7	NPH3 family
`XP_057795148.1`	Pfam	`PF03000`	NPH3	Family	199	424	5.5e-70	236.7	NPH3 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939162.1
CACATTTACTACACATTTTGCAGACAGCTTTTTTTGTTCTTCACTTCCTTCTCCAATGGCTTTCACTCTTTCCTACTCTTAGATGCTAAGAAATAACCCAAGCTCAGCATTAGAAATGAAGCTAGCTACCAAAAATCTCTAATATGCATGTATGATCATTCTCTAAAATCTTGAATCTGCAGCTGTTGTACTCAATTTTGAGGATTCCCATTTCCAAATTAGTTAAAAGATCTGCAAAAGTCACTTTATCAGTAAAGATT...

XM_057939163.1
CACATTTACTACACATTTTGCAGACAGCTTTTTTTGTTCTTCACTTCCTTCTCCAATGGCTTTCACTCTTTCCTACTCTTAGATGCTAAGAAATAACCCAAGCTCAGCATTAGAAATGAAGCTAGCTACCAAAAATCTCTAATATGCATGTATGATCATTCTCTAAAATCTTGAATCTGCAGCTGTTGTACTCAATTTTGAGGATTCCCATTTCCAAATTAGTTAAAAGATCTGCAAAAGTCACTTTATCAGTAAAGATT...

CDS

4 records

下载 CDS FASTA

LOC131011363
ATGAAGTTTATGAAACTTGGATTGAATCCAGACACCTTCTACACCGAAGATGCCACGAGGACCGTGATATCAGATGTGCCAACTGACCTCACCATTAGGATAGATGGCATCACCTATCTTCTCCACAAGTCTTGTCTTGTTCCAAAATGTGGGCTATTGCAAAGGCTTTTCTCGGAGAAAGACGAGGGCGGGGACGTGTCGGTGGAGCTCCACGACATTCCGGGAGGGGAGGAGGCGTTCGAGCTTTGTGCTAAGTTCTG...

Protein

4 records

下载 Protein FASTA

XP_057795145.1
MKFMKLGLNPDTFYTEDATRTVISDVPTDLTIRIDGITYLLHKSCLVPKCGLLQRLFSEKDEGGDVSVELHDIPGGEEAFELCAKFCYGITISLSAHKFVAALCAASFLRMTEKVENGNLIAKLEAFFSSCILQAWKDSLIALHNAERLCDWSQNLGIVRRCIESIVDKILTPPTKVKWSYTYTRPGYVRKRRDSVPKDWWTEDLSCLGIDMFSSIVTTITSTNMLQPRLIGEALHVYAHCWLLNASEGSPGSKRRVLET...

XP_057795146.1
MKFMKLGLNPDTFYTEDATRTVISDVPTDLTIRIDGITYLLHKSCLVPKCGLLQRLFSEKDEGGDVSVELHDIPGGEEAFELCAKFCYGITISLSAHKFVAALCAASFLRMTEKVENGNLIAKLEAFFSSCILQAWKDSLIALHNAERLCDWSQNLGIVRRCIESIVDKILTPPTKVKWSYTYTRPGYVRKRRDSVPKDWWTEDLSCLGIDMFSSIVTTITSTNMLQPRLIGEALHVYAHCWLLNASEGSPGSKRRVLET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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