Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000930

染色体: Chr02 坐标: 16205047-16214520 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000930
名称SmilChr02G000930
描述calcineurin B-like protein 3
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向16205047 - 16214520 / +

ID 对照

NCBI Gene IDLOC131011366
GeneID131011366
locus_tag-
NCBI NameLOC131011366
原始查询LOC131011366

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcineurin B-like protein 3
产物calcineurin B-like protein 3
ArabidopsisAT4G26570 (CBL3)
calcineurin B-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:828764]
identity=82.9; qcov=0.994; evalue=3.65e-98; confidence=high
RiceOs03g0626800 (OsCBL3)
-
identity=81.2; qcov=0.994; evalue=5.88e-97; confidence=high
GOGO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG-
PfamPF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:131011366

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 0.80000 XP_057795150.1
2 Vacuole membrane 液泡膜 0.80000 XP_057795151.1
3 Cytoplasm 细胞质 0.60000 XP_057795150.1
4 Cytosol 细胞质基质 0.20000 XP_057795150.1
5 Nucleus 细胞核 0.00000 XP_057795151.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:16213781 G A EMS_canonical_SNV CDS_variant 2 B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795150.1
226 aa
N
1
113
226
EF-hand_8
EF-hand_5
EF-hand_7
EF-hand_5
EF-hand_1
C
PF13833 EF-hand_8 64-111 aa PF13202 EF-hand_5 88-109 aa PF13499 EF-hand_7 122-187 aa PF13202 EF-hand_5 168-192 aa PF00036 EF-hand_1 168-194 aa
XP_057795151.1
182 aa
N
1
91
182
EF-hand_5
C
PF13202 EF-hand_5 88-109 aa
XP_057795152.1
171 aa
N
1
86
171
EF-hand_5
C
PF13202 EF-hand_5 88-109 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795150.1 Pfam PF13833 EF-hand_8 Domain 64 111 9.5e-07 29.2 EF-hand domain pair
XP_057795150.1 Pfam PF13202 EF-hand_5 Domain 88 109 5.4e-17 61.1 EF hand
XP_057795150.1 Pfam PF13499 EF-hand_7 Domain 122 187 6.3e-16 59.2 EF-hand domain pair
XP_057795150.1 Pfam PF13202 EF-hand_5 Domain 168 192 5.4e-17 61.1 EF hand
XP_057795150.1 Pfam PF00036 EF-hand_1 Domain 168 194 1.1e-19 69.2 EF hand domain
XP_057795151.1 Pfam PF13202 EF-hand_5 Domain 88 109 4.4e-08 33.0 EF hand
XP_057795152.1 Pfam PF13202 EF-hand_5 Domain 88 109 4.1e-08 33.1 EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057939168.1
GACACAAATAATTATGCATGTGGGGTGAATGGATCTAATAGCTTAGATGTAAATTTATGTAGCTTAGATGTTGGGATTCCGATATACAGTCATAATCCGTATATTCACACTCGTTTTCTTCTTTTCCTTTCCTCCCTTCACTTTCCACTTTGTTTGTTCATGTCATGTATGAATATATCTGCTGCTAATTTTCATTCTTCCAGAAAAAGGTGACTGCGGAAACGCTCGATTTGGAATTTCAGAATATTTATTTCTACCGG...
XM_057939169.1
CACAAATAATTATGCATGTGGGGTGAATGGATCTAATAGCTTAGATGTAAATTTATGTAGCTTAGATGTTGGGATTCCGATATACAGTCATAATCCGTATATTCACACTCGTTTTCTTCTTTTCCTTTCCTCCCTTCACTTTCCACTTTGTTTGTTCATGTCATGTATGAATATATCTGCTGCTAATTTTCATTCTTCCAGAAAAAGGTGACTGCGGAAACGCTCGATTTGGAATTTCAGAATATTTATTTCTACCGGAA...

CDS

3 records

下载 CDS FASTA
LOC131011366
ATGGTGCAGTGCCTAGATGGAGTGAAGCATCTGCTTTCTGCTATTGTAAATTGCTGTGAATCTGATATCAATAAACATCCCTGCGGGCTGGGAGATCCTGAAGCTCTAGCAAGCGTGACAGTTTTTAGTGTTAGTGAAATAGAAGCATTGTATGAATTATTTAAAAAGATCAGCAGTGCTGTGGTAGATGATGGGCTTATTAATAAGGAGGAGTTCCAGCTTGCTCTTTTTAAGACCAACCAAAAGGAGAGCCTGTTTGC...
LOC131011366
ATGGTGCAGTGCCTAGATGGAGTGAAGCATCTGCTTTCTGCTATTGTAAATTGCTGTGAATCTGATATCAATAAACATCCCTGCGGGCTGGGAGATCCTGAAGCTCTAGCAAGCGTGACAGTTTTTAGTGTTAGTGAAATAGAAGCATTGTATGAATTATTTAAAAAGATCAGCAGTGCTGTGGTAGATGATGGGCTTATTAATAAGGAGGAGTTCCAGCTTGCTCTTTTTAAGACCAACCAAAAGGAGAGCCTGTTTGC...

Protein

3 records

下载 Protein FASTA
XP_057795150.1
MVQCLDGVKHLLSAIVNCCESDINKHPCGLGDPEALASVTVFSVSEIEALYELFKKISSAVVDDGLINKEEFQLALFKTNQKESLFADRVFDLFDAKHNGILDFEEFAQALSVFHPNASIDDKIDFSFQLYDLKKQGFIERQEVKQMVVVTLAESGMNLSDDIIESIIDKTFEEADTKHDGKIDKEEWRSLVNRHPSLLKNMTLQYLKDITTTFPSFVFHSQVNDT
XP_057795151.1
MVQCLDGVKHLLSAIVNCCESDINKHPCGLGDPEALASVTVFSVSEIEALYELFKKISSAVVDDGLINKEEFQLALFKTNQKESLFADRVFDLFDAKHNGILDFEEFAQALSVFHPNASIDDKIDFSFQLYDLKKQGFIERQEVKQMVVVTLAESGMNLSDDIIESIIDKNMTIFSSNDCNY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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