当前解析结果
SmilChr02G000932| 统一新 Gene ID | SmilChr02G000932 |
|---|---|
| 名称 | SmilChr02G000932 |
| 描述 | U-box domain-containing protein 33-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 16239087 - 16243164 / - |
| NCBI Gene ID | LOC131011368 |
|---|---|
| GeneID | 131011368 |
| locus_tag | - |
| NCBI Name | LOC131011368 |
| 原始查询 | LOC131011368 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 33-like |
| 产物 | U-box domain-containing protein 33-like |
| Arabidopsis | AT5G47740 (AT5G47740)Adenine nucleotide alpha hydrolases-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834825] identity=45; qcov=0.877; evalue=3e-54; confidence=medium |
| Rice | Os06g0140800 (OsPUB51)- identity=33.1; qcov=0.567; evalue=1.71e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011368 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057795155.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057795155.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057795155.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057795155.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795155.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:16239452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:16239610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr2:16239863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,C24,C9,D7,D9 |
Chr2:16240111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr2:16240122 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D4 |
Chr2:16240122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr2:16240128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C8 |
Chr2:16242721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B61 |
Chr2:16242736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C8 |
Chr2:16242767 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | C17 |
Chr2:16242767 |
T |
TG |
1bp_insertion | CDS_variant | 1 | C17 |
Chr2:16242925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。