当前解析结果
SmilChr02G000941| 统一新 Gene ID | SmilChr02G000941 |
|---|---|
| 名称 | SmilChr02G000941 |
| 描述 | receptor-like serine/threonine-protein kinase SD1-7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 16404457 - 16405567 / - |
| NCBI Gene ID | LOC131011377 |
|---|---|
| GeneID | 131011377 |
| locus_tag | - |
| NCBI Name | LOC131011377 |
| 原始查询 | LOC131011377 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like serine/threonine-protein kinase SD1-7 |
| 产物 | receptor-like serine/threonine-protein kinase SD1-7 |
| Arabidopsis | AT1G65790 (RK1)receptor kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:842890] identity=51.1; qcov=1.03; evalue=5.64e-55; confidence=high |
| Rice | Os11g0681400 (OsRLCK352)- identity=49.5; qcov=1.01; evalue=6.88e-56; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011377 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795161.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057795161.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795161.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795161.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795161.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:16404663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:16404677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B52,C38,C51,C56,C81 |
Chr2:16404678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:16404682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:16404693 |
TC |
T |
1bp_deletion | frameshift_variant | 10 | A5,B120,B135,B21,C3,C31,C37,C46,D3,D7 |
Chr2:16404710 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C60 |
Chr2:16404710 |
G |
GT |
1bp_insertion | CDS_variant | 1 | C60 |
Chr2:16404720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:16404734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B52,C38,C51,C56,C81 |
Chr2:16404737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:16404779 |
T |
TA |
1bp_insertion | frameshift_variant | 11 | B13,B17,B21,B30,B36,B45,B8,C33,C43,C55,C71 |
Chr2:16404804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B51,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795161.1PF00069
Pkinase 3-64 aa
PF07714
PK_Tyr_Ser-Thr 4-65 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795161.1 |
Pfam | PF00069 |
Pkinase | Domain | 3 | 64 | 8e-11 | 42.6 | Protein kinase domain |
XP_057795161.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 4 | 65 | 1.8e-13 | 51.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。