Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000948`

染色体: Chr02 坐标: 16496916-16500451 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000948`
名称	SmilChr02G000948
描述	uncharacterized SmilChr02G000948
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16496916 - 16500451 / `-`

ID 对照

NCBI Gene ID	`LOC131011385`
GeneID	`131011385`
locus_tag	`-`
NCBI Name	`LOC131011385`
原始查询	`LOC131011385`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835654]; symbol=AT5G55600; hit=AT5G55600; species=arabidopsis; confidence=medium
产物	At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835654]; symbol=AT5G55600; hit=AT5G55600; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G55600` (AT5G55600) At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835654] identity=37.1; qcov=0.635; evalue=2.45e-46; confidence=medium
Rice	`Os07g0607300` (P0493C06.37-1) - identity=48.8; qcov=0.394; evalue=8.31e-40; confidence=low
GO	-
KEGG	-
Pfam	PF05641 (Agenet)
InterPro	-
eggNOG	-
NR	GeneID:131011385

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795174.1`
2	Chromosome	染色体	0.00000	`XP_057795174.1`
3	Centromere	着丝粒	0.00000	`XP_057795174.1`
4	Chromatin	染色质	0.00000	`XP_057795174.1`
5	Telomere	端粒	0.00000	`XP_057795174.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16497217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C26
`Chr2:16497380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B53,B8,C5
`Chr2:16497398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,C24,C9,D7,D9
`Chr2:16497706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,B8
`Chr2:16497765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,C24,C9,D7,D9
`Chr2:16498132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B86,B89,C75
`Chr2:16498186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C24,C9,D7,D9
`Chr2:16498320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:16498327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:16498387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B54,C15,C21,C49
`Chr2:16498388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B8
`Chr2:16499584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B54,C15,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795174.1

416 aa

208

416

Agenet

PF05641 Agenet 192-265 aa

XP_057795175.1

416 aa

208

416

Agenet

PF05641 Agenet 192-265 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795174.1`	Pfam	`PF05641`	Agenet	Domain	192	265	1.1e-17	64.9	Agenet domain
`XP_057795175.1`	Pfam	`PF05641`	Agenet	Domain	192	265	1.1e-17	64.9	Agenet domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939192.1
AAAACATTAACAAACAAAATCACTGCAAAAAAAGGAATGCAGTACACACGGCACTTGGCCTTTACGGTTTTCATTCCCGGCAGTAAGGCCTTTGCTTCTCTCTCTCCTTCTCTCTCTTAAACATCAATCAACTCTTTCCATAAACCCTTAAACCCACCAACCTTTTCGTCTCTTTCCCTCTGCCGAACTGAACAACCTGCCTGCGTCTTTTCATATCTCAGGATGTGTGATAGTGGAGTGTTAAGGGCGTGGGAAGAGTG...

XM_057939191.1
AAAAAAGGAATGCAGTACACACGGCACTTGGCCTTTACGGTTTTCATTCCCGGCAGTAAGGCCTTTGCTTCTCTCTCTCCTTCTCTCTCTTAAACATCAATCAACTCTTTCCATAAACCCTTAAACCCACCAACCTTTTCGTCTCTTTCCCTCTGCCGAACTGAACAACCTGCCTGCGTCTTTTCATATCTCAGGTGAACTCTAAATTGTTTTTATCGTATTGTGTTTCAGTTATGCTGCTAGCCTTTAATGTTAGTGGG...

CDS

2 records

下载 CDS FASTA

LOC131011385
ATGTGTGATAGTGGAGTGTTAAGGGCGTGGGAAGAGTGTGTTGTGGTGCCAGAGAGAGGCAGCCGCATTGTTCATTATATACTGAAAGATAACATTGGGAATTCTGTCGTTGCTGCGGTTGGGAGAGAGAGGTGCATCAATCACATGGTGTATACAATTTCAGATGACTTCTTGCGTGTTTTTGGGTCCACGACGGGTGTTGGTGCAGGGAAGAAGTGGCATGCGAGACGAGAGGTTGTTGAGTGGCTCATCTCAGTTGT...

Protein

2 records

下载 Protein FASTA

XP_057795174.1
MCDSGVLRAWEECVVVPERGSRIVHYILKDNIGNSVVAAVGRERCINHMVYTISDDFLRVFGSTTGVGAGKKWHARREVVEWLISVVARGGPITASSISCQSNNAQATAERIKRSAPDTPPLQASKRVKRCRLSEILDSSCTGNTGLISDNRAVKWEPTCNRVRIKFPIKRTVGVALPASEPLCKVFPKLSDSIELLSRDSGMRGCWFRCKILLSSKSRLKVQYKDVMQADGARKLEEWVPASRVADPDKLGNRCVGRLT...

XP_057795175.1
MCDSGVLRAWEECVVVPERGSRIVHYILKDNIGNSVVAAVGRERCINHMVYTISDDFLRVFGSTTGVGAGKKWHARREVVEWLISVVARGGPITASSISCQSNNAQATAERIKRSAPDTPPLQASKRVKRCRLSEILDSSCTGNTGLISDNRAVKWEPTCNRVRIKFPIKRTVGVALPASEPLCKVFPKLSDSIELLSRDSGMRGCWFRCKILLSSKSRLKVQYKDVMQADGARKLEEWVPASRVADPDKLGNRCVGRLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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