Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000988`

染色体: Chr02 坐标: 17397232-17403890 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000988`
名称	SmilChr02G000988
描述	uncharacterized SmilChr02G000988
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	17397232 - 17403890 / `-`

ID 对照

NCBI Gene ID	`LOC131011416`
GeneID	`131011416`
locus_tag	`-`
NCBI Name	`LOC131011416`
原始查询	`LOC131011416`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844295]; symbol=AT1G79570; hit=AT1G79570; species=arabidopsis; confidence=high
产物	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844295]; symbol=AT1G79570; hit=AT1G79570; species=arabidopsis; confidence=high
Arabidopsis	`AT1G79570` (AT1G79570) kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844295] identity=49; qcov=0.732; evalue=0; confidence=high
Rice	`Os12g0594300` - identity=80.5; qcov=0.248; evalue=1.64e-164; confidence=weak
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF00564 (PB1); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131011416

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057795208.1`
2	Cytoplasm	细胞质	0.40000	`XP_057795208.1`
3	Cytosol	细胞质基质	0.40000	`XP_057795208.1`
4	Nucleus	细胞核	0.00000	`XP_057795208.1`
5	Chromosome	染色体	0.00000	`XP_057795208.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:17399794`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C33
`Chr2:17399794`	`GA`	`G`	1bp_deletion	CDS_variant	1	C33
`Chr2:17400413`	`TGA`	`T`	2bp_deletion	frameshift_variant	104	A1,A11,A14,A15,A16,A2,A21,A25,A4,A7,A9,B101,B102,B103,B106,B108,B110,B111,B113,B117,B121,B123,B124,B125,B128,B129,B130,B134,B14,B15,B20,B21,B22,B27,B28,B3,B31,B39,B4,B42,B43,B44,B45,B5,B51,B52,B61,B62,B72,B73,B77,B81,B82,B84,B85,B86,B89,B90,B92,B94,C10,C11,C12,C14,C17,C18,C25,C27,C29,C3,C30,C31,C33,C41,C42,C44,C47,C48,C49,C50,C53,C54,C55,C58,C59,C63,C64,C66,C67,C69,C7,C71,C72,C73,C75,C79,C8,C80,C81,C83,C85,C86,C87,D10
`Chr2:17400421`	`TC`	`T`	1bp_deletion	frameshift_variant	104	A1,A11,A14,A15,A16,A2,A21,A25,A4,A7,A9,B101,B102,B103,B106,B108,B110,B111,B113,B117,B121,B123,B124,B125,B128,B129,B130,B134,B14,B15,B20,B21,B22,B27,B28,B3,B31,B39,B4,B42,B43,B44,B45,B5,B51,B52,B61,B62,B72,B73,B77,B81,B82,B84,B85,B86,B89,B90,B92,B94,C10,C11,C12,C14,C17,C18,C25,C27,C29,C3,C30,C31,C33,C41,C42,C44,C47,C48,C49,C50,C53,C54,C55,C58,C59,C63,C64,C66,C67,C69,C7,C71,C72,C73,C75,C79,C8,C80,C81,C83,C85,C86,C87,D10
`Chr2:17400514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C46,D4
`Chr2:17401008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:17401162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,C32,C68
`Chr2:17401229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B61
`Chr2:17401266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,C32,C68
`Chr2:17401775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B26,B35,B69,C5
`Chr2:17402090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:17402356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795208.1

1204 aa

602

1204

PB1

Pkinase

PK_Tyr_Ser-Thr

PF00564 PB1 199-283 aa PF00069 Pkinase 928-1187 aa PF07714 PK_Tyr_Ser-Thr 929-1190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795208.1`	Pfam	`PF00564`	PB1	Domain	199	283	2.3e-18	66.6	PB1 domain
`XP_057795208.1`	Pfam	`PF00069`	Pkinase	Domain	928	1187	2e-49	169.1	Protein kinase domain
`XP_057795208.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	929	1190	2.4e-63	214.6	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939225.1
ATTACGAATTTTCATGATGGTTTTAATAATCCTTGATTCTGTGGGAAGGAGAAACTAGAAGCCGTCATTCTCTTGCGCCTGCTCAAAATGCCTTCGAAAACAACGAATTCGAATTCCATTACTCTTTCCCCCTTCAAATAAAAACATTTACTACTATTTATTTATTTATTTATTTTTTTCTCTCTAAAATCTCGAGCAGAACACTCTTTTTCATTTTTTCTTTTTATTTCGTTTTATTCACGCTGAAGATGAAACTGTGG...

CDS

1 records

下载 CDS FASTA

LOC131011416
ATGTTCTCTAATCTTGAGATGCAAACATCAAAGAATCAAGACCCGGTGCAACTCCGTTCATCAGAAGCCGGAAACCAAGAACATCATCCTGAATTACAAGTTTCCAGGATAGATTCTTCGGCTCATGCAAATGCAAGTCTGAATTCTGCAGAGACTAATTTTCCAGAAGCTAAACCGGTACATAATTACTCTATACAGACTGGTGAGGAATTTGCTCTTGAATTTATGCGTGACCGAGTCATTCCCAAGAAACATGTTCC...

Protein

1 records

下载 Protein FASTA

XP_057795208.1
MFSNLEMQTSKNQDPVQLRSSEAGNQEHHPELQVSRIDSSAHANASLNSAETNFPEAKPVHNYSIQTGEEFALEFMRDRVIPKKHVPNIPGDSSNASSYLELKGMLGISHTGSESGSAISMIATAEKDPREFERNNLSLQGDKFNSGSFQSMQSVPHSSSGQNSQRILVYTSSGTSHSSSTKLKVLCSFCGRILPRPSDGKLRYVGGETRIVRINKDITWKELWQKATAIYDETCAIKYQLPGEDLDALVSVSSDEDLLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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