当前解析结果
SmilChr02G000999| 统一新 Gene ID | SmilChr02G000999 |
|---|---|
| 名称 | SmilChr02G000999 |
| 描述 | probable L-type lectin-domain containing receptor kinase S.7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 17625288 - 17627802 / + |
| NCBI Gene ID | LOC131011427 |
|---|---|
| GeneID | 131011427 |
| locus_tag | - |
| NCBI Name | LOC131011427 |
| 原始查询 | LOC131011427 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable L-type lectin-domain containing receptor kinase S.7 |
| 产物 | probable L-type lectin-domain containing receptor kinase S.7 |
| Arabidopsis | AT5G55830 (AT5G55830)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835677] identity=64.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0285400- identity=55.2; qcov=0.957; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011427 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795215.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057795215.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795215.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795215.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795215.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:17625744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr2:17625761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,C1,C43 |
Chr2:17625810 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | C48 |
Chr2:17625810 |
CG |
C |
1bp_deletion | CDS_variant | 1 | C48 |
Chr2:17625827 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | A11,B22,B91 |
Chr2:17625827 |
AG |
A |
1bp_deletion | CDS_variant | 3 | A11,B22,B91 |
Chr2:17625829 |
AT |
A |
1bp_deletion | frameshift_variant | 48 | A1,A14,A24,B120,B122,B132,B15,B23,B27,B28,B42,B47,B5,B50,B53,B57,B60,B61,B69,B70,B71,B74,B77,B8,B94,B95,B96,C11,C20,C29,C3,C37,C48,C51,C53,C55,C56,C65,C73,C76,C79,C81,C87,C9,D11,D4,D7,D9 |
Chr2:17625862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:17625865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,C85 |
Chr2:17625871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B70,C15,C79,D9 |
Chr2:17625893 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | B106,B5,B70,B85,C53,C56,C65,C72,C78 |
Chr2:17625898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795215.1PF00139
Lectin_legB 30-260 aa
PF00069
Pkinase 353-621 aa
PF07714
PK_Tyr_Ser-Thr 355-621 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795215.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 30 | 260 | 3.4e-64 | 217.5 | Legume lectin domain |
XP_057795215.1 |
Pfam | PF00069 |
Pkinase | Domain | 353 | 621 | 7.6e-52 | 177.0 | Protein kinase domain |
XP_057795215.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 355 | 621 | 5.7e-47 | 160.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。