Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001041`

染色体: Chr02 坐标: 18491220-18493750 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001041`
名称	SmilChr02G001041
描述	probable E3 ubiquitin-protein ligase RHB1A
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	18491220 - 18493750 / `+`

ID 对照

NCBI Gene ID	`LOC131011455`
GeneID	`131011455`
locus_tag	`-`
NCBI Name	`LOC131011455`
原始查询	`LOC131011455`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RHB1A
产物	probable E3 ubiquitin-protein ligase RHB1A
Arabidopsis	`AT4G00335` (RHB1A) RING-H2 finger B1A [Source:NCBI gene (formerly Entrezgene);Acc:828093] identity=47.6; qcov=0.995; evalue=2.19e-54; confidence=high
Rice	`Os11g0294600` - identity=46.2; qcov=0.979; evalue=4.54e-42; confidence=medium
GO	GO:0004842 (ubiquitin-protein transferase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:131011455

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057795231.1`
2	Nucleus	细胞核	0.20000	`XP_057795231.1`
3	Cytosol	细胞质基质	0.20000	`XP_057795236.1`
4	Cell membrane	细胞膜	0.20000	`XP_057795236.1`
5	Chromosome	染色体	0.00000	`XP_057795231.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:18492761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B120,B128,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795231.1

194 aa

194

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF12678 zf-rbx1 130-174 aa PF12861 zf-ANAPC11 132-177 aa PF13639 zf-RING_2 133-174 aa PF13445 zf-RING_UBOX 134-172 aa PF00097 zf-C3HC4 134-174 aa PF13923 zf-C3HC4_2 134-174 aa PF14634 zf-RING_5 134-176 aa

XP_057795232.1

194 aa

194

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

XP_057795233.1

194 aa

194

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

XP_057795234.1

194 aa

194

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

XP_057795236.1

190 aa

190

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF12678 zf-rbx1 130-174 aa PF12861 zf-ANAPC11 132-179 aa PF13639 zf-RING_2 133-174 aa PF13445 zf-RING_UBOX 134-165 aa PF00097 zf-C3HC4 134-174 aa PF13923 zf-C3HC4_2 134-174 aa PF14634 zf-RING_5 134-176 aa

XP_057795237.1

190 aa

190

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795231.1`	Pfam	`PF12678`	zf-rbx1	Domain	130	174	2.3e-12	47.7	RING-H2 zinc finger domain
`XP_057795231.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	132	177	9e-08	32.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057795231.1`	Pfam	`PF13639`	zf-RING_2	Domain	133	174	1.3e-12	48.5	Ring finger domain
`XP_057795231.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	134	172	2.6e-07	31.3	RING-type zinc-finger
`XP_057795231.1`	Pfam	`PF00097`	zf-C3HC4	Domain	134	174	7.9e-08	32.8	Zinc finger, C3HC4 type (RING finger)
`XP_057795231.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	134	174	3.6e-09	37.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795231.1`	Pfam	`PF14634`	zf-RING_5	Domain	134	176	9.5e-07	29.4	zinc-RING finger domain
`XP_057795232.1`	Pfam	`PF12678`	zf-rbx1	Domain	130	174	2.3e-12	47.7	RING-H2 zinc finger domain
`XP_057795232.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	132	177	9e-08	32.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057795232.1`	Pfam	`PF13639`	zf-RING_2	Domain	133	174	1.3e-12	48.5	Ring finger domain
`XP_057795232.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	134	172	2.6e-07	31.3	RING-type zinc-finger
`XP_057795232.1`	Pfam	`PF00097`	zf-C3HC4	Domain	134	174	7.9e-08	32.8	Zinc finger, C3HC4 type (RING finger)
`XP_057795232.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	134	174	3.6e-09	37.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795232.1`	Pfam	`PF14634`	zf-RING_5	Domain	134	176	9.5e-07	29.4	zinc-RING finger domain
`XP_057795233.1`	Pfam	`PF12678`	zf-rbx1	Domain	130	174	2.3e-12	47.7	RING-H2 zinc finger domain
`XP_057795233.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	132	177	9e-08	32.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057795233.1`	Pfam	`PF13639`	zf-RING_2	Domain	133	174	1.3e-12	48.5	Ring finger domain
`XP_057795233.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	134	172	2.6e-07	31.3	RING-type zinc-finger
`XP_057795233.1`	Pfam	`PF00097`	zf-C3HC4	Domain	134	174	7.9e-08	32.8	Zinc finger, C3HC4 type (RING finger)
`XP_057795233.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	134	174	3.6e-09	37.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795233.1`	Pfam	`PF14634`	zf-RING_5	Domain	134	176	9.5e-07	29.4	zinc-RING finger domain
`XP_057795234.1`	Pfam	`PF12678`	zf-rbx1	Domain	130	174	2.3e-12	47.7	RING-H2 zinc finger domain
`XP_057795234.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	132	177	9e-08	32.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057795234.1`	Pfam	`PF13639`	zf-RING_2	Domain	133	174	1.3e-12	48.5	Ring finger domain
`XP_057795234.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	134	172	2.6e-07	31.3	RING-type zinc-finger
`XP_057795234.1`	Pfam	`PF00097`	zf-C3HC4	Domain	134	174	7.9e-08	32.8	Zinc finger, C3HC4 type (RING finger)
`XP_057795234.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	134	174	3.6e-09	37.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795234.1`	Pfam	`PF14634`	zf-RING_5	Domain	134	176	9.5e-07	29.4	zinc-RING finger domain
`XP_057795236.1`	Pfam	`PF12678`	zf-rbx1	Domain	130	174	2.1e-12	47.8	RING-H2 zinc finger domain
`XP_057795236.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	132	179	1.1e-08	35.7	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057795236.1`	Pfam	`PF13639`	zf-RING_2	Domain	133	174	1.2e-12	48.6	Ring finger domain
`XP_057795236.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	134	165	5.8e-07	30.1	RING-type zinc-finger
`XP_057795236.1`	Pfam	`PF00097`	zf-C3HC4	Domain	134	174	7.4e-08	32.9	Zinc finger, C3HC4 type (RING finger)
`XP_057795236.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	134	174	3.2e-09	37.2	Zinc finger, C3HC4 type (RING finger)
`XP_057795236.1`	Pfam	`PF14634`	zf-RING_5	Domain	134	176	8.8e-07	29.5	zinc-RING finger domain
`XP_057795237.1`	Pfam	`PF12678`	zf-rbx1	Domain	130	174	2.1e-12	47.8	RING-H2 zinc finger domain
`XP_057795237.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	132	179	1.1e-08	35.7	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057795237.1`	Pfam	`PF13639`	zf-RING_2	Domain	133	174	1.2e-12	48.6	Ring finger domain
`XP_057795237.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	134	165	5.8e-07	30.1	RING-type zinc-finger
`XP_057795237.1`	Pfam	`PF00097`	zf-C3HC4	Domain	134	174	7.4e-08	32.9	Zinc finger, C3HC4 type (RING finger)
`XP_057795237.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	134	174	3.2e-09	37.2	Zinc finger, C3HC4 type (RING finger)
`XP_057795237.1`	Pfam	`PF14634`	zf-RING_5	Domain	134	176	8.8e-07	29.5	zinc-RING finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057939250.1
GACTCAACAATTGTTTACGTGCACATCTTATATTTCTCTTCATTTTTCTATTTTTGAGTTCCCCAAATATTTTCCCTTTTACCCTTTTCCCACTCTCTCCCTCAATTCTCCTACCTTTGCACGTACTTCCATGATCAGCCGTTATTCCCAATGAAAATTTCGAAATTGGCAGTTTTTTCTTCAATACTTTGCTGTTGATTCATTGCCTTTTACTTTAAACTTGAAACCAGATGTTATTCTGAGTGCACAAAGGGGCTGGA...

XM_057939253.1
TCTTATATTTCTCTTCATTTTTCTATTTTTGAGTTCCCCAAATATTTTCCCTTTTACCCTTTTCCCACTCTCTCCCTCAATTCTCCTACCTTTGCACGTACTTCCATGATCAGCCGTTATTCCCAATGAAAATTTCGAAATTGGCAGTTTTTTCTTCAATACTTTGCTGTTGATTCATTGCCTTTTACTTTAAACTTGAAACCAGATGTTATTCTGAGTGCACAAAGGGGCTGGAAAATTGTTGAAGTCTTAGTTGTTAG...

CDS

6 records

下载 CDS FASTA

LOC131011455
ATGGGAGGTTGTTGCTCATCTTCCAGAAAGCTGCAGCTTCGTGGAGCGCCAGTGTATTATTATTACCCACCAGCTCCAGAAGAGAATGCATTCCCTAGTTCTCGCAGTAGTGGACTGTTGCTCGATTTAAATCTGAATATGTCAGCTCCTGACACTTATCGACCCCCTCCTGCACCTATACCATATGATGTGGTTCTGGGGCGTCCACTGTCTACAGATGTTGGGTCGAGAGACGTGACTTTAAGTGGCAATTTTTTAGG...

Protein

6 records

下载 Protein FASTA

XP_057795231.1
MGGCCSSSRKLQLRGAPVYYYYPPAPEENAFPSSRSSGLLLDLNLNMSAPDTYRPPPAPIPYDVVLGRPLSTDVGSRDVTLSGNFLGKHGCKDLQGANYTTQLGILLPSPKKTDVELLKSNPLTVAATDEEDVCPTCLEEYDSENPKIMTKCNHHFHLSCILEWMERSDTCPICDQVSLMPGYTQQLDFFSFFL

XP_057795232.1
MGGCCSSSRKLQLRGAPVYYYYPPAPEENAFPSSRSSGLLLDLNLNMSAPDTYRPPPAPIPYDVVLGRPLSTDVGSRDVTLSGNFLGKHGCKDLQGANYTTQLGILLPSPKKTDVELLKSNPLTVAATDEEDVCPTCLEEYDSENPKIMTKCNHHFHLSCILEWMERSDTCPICDQVSLMPGYTQQLDFFSFFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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