当前解析结果
SmilChr02G001046| 统一新 Gene ID | SmilChr02G001046 |
|---|---|
| 名称 | SmilChr02G001046 |
| 描述 | probable glycerol-3-phosphate acyltransferase 8 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 18509589 - 18513114 / - |
| NCBI Gene ID | LOC131011460 |
|---|---|
| GeneID | 131011460 |
| locus_tag | - |
| NCBI Name | LOC131011460 |
| 原始查询 | LOC131011460 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable glycerol-3-phosphate acyltransferase 8 |
| 产物 | probable glycerol-3-phosphate acyltransferase 8 |
| Arabidopsis | AT1G01610 (GPAT4)glycerol-3-phosphate acyltransferase 4 [Source:NCBI gene (formerly Entrezgene);Acc:839297] identity=73.3; qcov=0.988; evalue=0; confidence=high |
| Rice | Os01g0855000 (GPAT)- identity=61; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase); PF12710 (HAD); PF23270 (HAD_RAM2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011460 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057795241.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057795241.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795241.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795241.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795241.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:18509809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,C63 |
Chr2:18510160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,C57 |
Chr2:18510373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr2:18510454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:18510599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr2:18512414 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D3 |
Chr2:18512414 |
TG |
T |
1bp_deletion | CDS_variant | 1 | D3 |
Chr2:18512507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B45,C10,C9 |
Chr2:18512513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B45,C10,C9 |
Chr2:18512666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B49,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795241.1PF23270
HAD_RAM2_N 27-216 aa
PF12710
HAD 28-207 aa
PF01553
Acyltransferase 303-402 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795241.1 |
Pfam | PF23270 |
HAD_RAM2_N | Domain | 27 | 216 | 2.3e-62 | 210.7 | Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain |
XP_057795241.1 |
Pfam | PF12710 |
HAD | Family | 28 | 207 | 9.7e-23 | 82.3 | haloacid dehalogenase-like hydrolase |
XP_057795241.1 |
Pfam | PF01553 |
Acyltransferase | Family | 303 | 402 | 8.7e-09 | 36.0 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。