Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001061`

染色体: Chr02 坐标: 18921196-18924120 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001061`
名称	SmilChr02G001061
描述	ABC transporter F family member 4-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	18921196 - 18924120 / `+`

ID 对照

NCBI Gene ID	`LOC131011467`
GeneID	`131011467`
locus_tag	`-`
NCBI Name	`LOC131011467`
原始查询	`LOC131011467`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter F family member 4-like
产物	ABC transporter F family member 4-like
Arabidopsis	`AT3G54540` (ABCF4) ral control non-repressible 4 [Source:NCBI gene (formerly Entrezgene);Acc:824619] identity=78.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0441500` (OsABCF2) - identity=69.9; qcov=0.989; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00005 (ABC_tran)
InterPro	-
eggNOG	-
NR	GeneID:131011467

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795244.1`
2	Nucleus	细胞核	0.60000	`XP_057795244.1`
3	Nucleolus	核仁	0.20000	`XP_057795244.1`
4	Cytosol	细胞质基质	0.20000	`XP_057795244.1`
5	Chromosome	染色体	0.00000	`XP_057795244.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:18921830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:18921872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B140,B69
`Chr2:18922092`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:18922481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:18922655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C36,D11
`Chr2:18922690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B95,C50,C62
`Chr2:18922788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:18922892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B136,B28,B55,B72
`Chr2:18922924`	`T`	`TC`	1bp_insertion	frameshift_variant	9	B13,B20,B7,B82,B93,C48,C8,C9,D3
`Chr2:18923064`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	14	A19,B13,B20,B37,B7,B74,B82,C10,C48,C49,C8,C9,D10,D3
`Chr2:18923148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B136,B28,B55,B72
`Chr2:18923208`	`GA`	`G`	1bp_deletion	frameshift_variant	5	A21,B135,B15,C45,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795244.1

718 aa

359

718

ABC_tran

PF00005 ABC_tran 174-344 aa PF00005 ABC_tran 508-643 aa

XP_057795245.1

718 aa

359

718

ABC_tran

PF00005 ABC_tran 174-344 aa PF00005 ABC_tran 508-643 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795244.1`	Pfam	`PF00005`	ABC_tran	Domain	174	344	1.2e-51	175.6	ABC transporter
`XP_057795244.1`	Pfam	`PF00005`	ABC_tran	Domain	508	643	1.2e-51	175.6	ABC transporter
`XP_057795245.1`	Pfam	`PF00005`	ABC_tran	Domain	174	344	1.2e-51	175.6	ABC transporter
`XP_057795245.1`	Pfam	`PF00005`	ABC_tran	Domain	508	643	1.2e-51	175.6	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939262.1
ACACTAATTCTTTTCATTCTTACATCCCAAAGAAGACAAGGAAATCAAGCACTACCATCCTACGTCCTCTCACATTCACAACCCTCGTTCGCACAGTCGCCGCCCTCACTAGTCGCACCGCAATCGTAGTTGCCACCCTCGCGCAGCCGTCGCACTACAGTCGCAGCTCTCTGCCGGCGCCACCATTGGCAATTAGGTAAGCTAAGAACTCACCGCCAGAGGTTTCCTGTTTTCGCAGGATTCTATTGCAAATGCCATTA...

XM_057939261.1
ACACTAATTCTTTTCATTCTTACATCCCAAAGAAGACAAGGAAATCAAGCACTACCATCCTACGTCCTCTCACATTCACAACCCTCGTTCGCACAGTCGCCGCCCTCACTAGTCGCACCGCAATCGTAGTTGCCACCCTCGCGCAGCCGTCGCACTACAGTCGCAGCTCTCTGCCGGCGCCACCATTGGCAATTAGCCATTACCGAAATGGGTAAGAAGAAATCAGATGAAGTTGCTGCTGGTTCAAAGTCCAAGCAGGG...

CDS

2 records

下载 CDS FASTA

LOC131011467
ATGGGTAAGAAGAAATCAGATGAAGTTGCTGCTGGTTCAAAGTCCAAGCAGGGTGGTAAGGAGAAGTTCTCAGTGACTGAATTACTCGCTAGCATGGATGCAAAACCTGATAAACCGAAGAAGACCAGTGCTTCCACTAATAAACCCAAGCCAAAAGCTGCTCCGAAAGCCTCATCTTATATTGATGGTATAGATCTTCCTTCATCTGATGAAGAAGATGATGCTTTGGGCTCTGAGGAAGAGGCCCAACTGAATGAGGT...

Protein

2 records

下载 Protein FASTA

XP_057795244.1
MGKKKSDEVAAGSKSKQGGKEKFSVTELLASMDAKPDKPKKTSASTNKPKPKAAPKASSYIDGIDLPSSDEEDDALGSEEEAQLNEVNSRRNIARPIDTGLTDKELKKRGKKDVLLGQAAEVAKQEALKDDRDAFTVVIGSRASVLDGENDADANVKDITVENFSVAARGKELLKNTSVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTALEAVVSANEELVKLRQEVASLQDASTMAT...

XP_057795245.1
MGKKKSDEVAAGSKSKQGGKEKFSVTELLASMDAKPDKPKKTSASTNKPKPKAAPKASSYIDGIDLPSSDEEDDALGSEEEAQLNEVNSRRNIARPIDTGLTDKELKKRGKKDVLLGQAAEVAKQEALKDDRDAFTVVIGSRASVLDGENDADANVKDITVENFSVAARGKELLKNTSVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRTALEAVVSANEELVKLRQEVASLQDASTMAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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