Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001178`

染色体: Chr02 坐标: 21648406-21652033 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001178`
名称	SmilChr02G001178
描述	ATP synthase gamma chain 2, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	21648406 - 21652033 / `-`

ID 对照

NCBI Gene ID	`LOC131011560`
GeneID	`131011560`
locus_tag	`-`
NCBI Name	`LOC131011560`
原始查询	`LOC131011560`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP synthase gamma chain 2, chloroplastic-like
产物	ATP synthase gamma chain 2%2C chloroplastic-like
Arabidopsis	`AT1G15700` (ATPC2) ATPase, F1 complex, gamma subunit protein [Source:NCBI gene (formerly Entrezgene);Acc:838139] identity=67.9; qcov=0.96; evalue=2.4e-175; confidence=high
Rice	`Os07g0513000` (P0580A11.134) - identity=65.2; qcov=0.864; evalue=1.63e-158; confidence=high
GO	GO:0000275 (GO:0000275); GO:0009535 (chloroplast thylakoid membrane); GO:0015986 (proton motive force-driven ATP synthesis); GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil00195 (Photosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00231 (ATP-synt)
InterPro	-
eggNOG	-
NR	GeneID:131011560

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057795313.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057795313.1`
3	Chloroplast thylakoid	类囊体	0.80000	`XP_057795313.1`
4	Nucleus	细胞核	0.00000	`XP_057795313.1`
5	Chromosome	染色体	0.00000	`XP_057795313.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:21650758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr2:21650782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:21650902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:21651131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,B25,B88
`Chr2:21651168`	`C`	`CA`	1bp_insertion	frameshift_variant	95	A1,A13,A14,A18,A2,A23,A25,A4,A5,A7,A8,B1,B10,B100,B104,B105,B106,B11,B111,B114,B117,B124,B125,B128,B131,B132,B133,B136,B14,B15,B17,B20,B25,B26,B30,B31,B32,B35,B4,B44,B45,B47,B51,B55,B59,B6,B64,B65,B66,B69,B78,B82,B86,B9,B90,B92,B98,C15,C19,C2,C20,C25,C29,C3,C30,C31,C33,C35,C37,C4,C41,C42,C46,C50,C53,C55,C56,C57,C63,C65,C66,C67,C7,C70,C71,C72,C73,C74,C78,C8,C81,C86,C9,D1,D7
`Chr2:21651170`	`C`	`CT`	1bp_insertion	frameshift_variant	17	A19,A25,A3,B113,B122,B129,B21,B33,B63,B79,C16,C22,C32,C64,C66,C68,D9
`Chr2:21651177`	`C`	`CA`	1bp_insertion	frameshift_variant	17	A19,A25,A3,B113,B122,B129,B21,B33,B63,B79,C16,C22,C32,C64,C66,C68,D9
`Chr2:21651180`	`AC`	`A`	1bp_deletion	frameshift_variant	92	A1,A13,A14,A18,A2,A23,A25,A4,A5,A7,A8,B1,B10,B100,B104,B105,B106,B11,B111,B114,B117,B124,B125,B128,B131,B132,B133,B136,B14,B15,B17,B20,B25,B26,B30,B31,B32,B4,B44,B45,B47,B51,B55,B59,B6,B64,B65,B66,B69,B78,B82,B86,B9,B90,B92,B98,C15,C19,C2,C20,C25,C29,C3,C30,C31,C33,C35,C37,C4,C42,C46,C50,C53,C55,C56,C57,C63,C65,C67,C7,C70,C71,C72,C73,C74,C78,C8,C81,C86,C9,D1,D7
`Chr2:21651230`	`T`	`TG`	1bp_insertion	frameshift_variant	127	A1,A13,A14,A18,A19,A2,A23,A25,A3,A4,A5,A7,A8,B1,B10,B100,B102,B104,B105,B106,B11,B111,B112,B113,B114,B117,B122,B124,B125,B127,B128,B129,B130,B131,B132,B133,B136,B14,B15,B17,B18,B20,B25,B26,B30,B31,B32,B33,B35,B4,B40,B44,B45,B47,B51,B55,B59,B6,B63,B64,B65,B66,B67,B68,B69,B77,B78,B79,B8,B82,B84,B86,B88,B9,B90,B92,B94,B95,B98,C14,C15,C16,C19,C2,C20,C22,C25,C29,C3,C30,C31,C32,C33,C35,C37,C41,C42,C44,C46,C49,C50,C53,C55,C56,C57,C63,C64,C65,C66,C67,C68,C7,C70,C71,C72,C73,C74,C78,C79,C8,C81,C86,C9,D1,D6,D7,D9
`Chr2:21651363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr2:21651370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B25,B88
`Chr2:21651375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B21,B26,B8,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795313.1

376 aa

188

376

ATP-synt

PF00231 ATP-synt 53-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795313.1`	Pfam	`PF00231`	ATP-synt	Domain	53	370	5.2e-90	302.7	ATP synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009097020.1
AACAATAAGCACTAAATACACCGACCGACCAAGACCTTAATTAAACCGGATCTGGAGCGAGAACCGTTTTCTTGGTTCACCAATATCTCAGAACTCATCACCCACTCCGGCGGTGATTCCATCAATTTTCCGGCAATCGGAGTAATATCGTCGCCAGAATAAGCACCTCACACCTATCAACAACTCATTTGTTTCTTCTTCTTCTTCTATGGCCTGTTCCTTTGCTTTTCCGATCAAAAATCATTATAGAAAATTCATAA...

XR_009097021.1
AACAATAAGCACTAAATACACCGACCGACCAAGACCTTAATTAAACCGGATCTGGAGCGAGAACCGTTTTCTTGGTTCACCAATATCTCAGAACTCATCACCCACTCCGGCGGTGATTCCATCAATTTTCCGGCAATCGGAGTAATATCGTCGCCAGAATAAGCACCTCACACCTATCAACAACTCATTTGTTTCTTCTTCTTCTTCTATGGCCTGTTCCTTTGCTTTTCCGATCAAAAATCATTATAGAAAATTCATAA...

CDS

1 records

下载 CDS FASTA

LOC131011560
ATGTCTTCTCTTATCTCGTCGACGTCTCTCTCTTCCAACGACTGCGGTTCAATCTCTTTCCATTCTCAGCTCAACCCGTTTCCGTTTCTCGGTCTTTCCCTCTCTTCAAGGCCTCACACCTCTCAGCCACCAAACCCCCCGTTGATTCAAAACGGGCTCCGTCAAATCCGAGAAAGAATGGAGTCCGTGAAGAACACGCAAAAAATCACCGAAGCAATGAAGCTGGTGGCTGCGGCCAAGGTACGGAGAGCTCAAGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057795313.1
MSSLISSTSLSSNDCGSISFHSQLNPFPFLGLSLSSRPHTSQPPNPPLIQNGLRQIRERMESVKNTQKITEAMKLVAAAKVRRAQEAVINGRPFAQSLVEMLYSINEQCQLDDVEVPLTAVRPVRRVALIVVTGERGLCGSFNNAILRKAELRIAELRNRGLDCTLISVGKKGNAYFRRRDNVKVDRFVEGDSFPTTKEAQVIADYVFSLFLCEEVDKVELLYTKFVSLIKSDPVVHTLLPLSGEGEAQDVNGRSVDAGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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