Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001186

染色体: Chr02 坐标: 21769337-21775497 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001186
名称SmilChr02G001186
描述uncharacterized SmilChr02G001186
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向21769337 - 21775497 / +

ID 对照

NCBI Gene IDLOC131011565
GeneID131011565
locus_tag-
NCBI NameLOC131011565
原始查询LOC131011565

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述NADH:ubiquinone oxidoreductase, 17.2kDa subunit [Source:NCBI gene (formerly Entrezgene);Acc:828804]; symbol=AT4G26965; hit=AT4G26965; species=arabidopsis; confidence=high
产物NADH:ubiquinone oxidoreductase, 17.2kDa subunit [Source:NCBI gene (formerly Entrezgene);Acc:828804]; symbol=AT4G26965; hit=AT4G26965; species=arabidopsis; confidence=high
ArabidopsisAT4G26965 (AT4G26965)
NADH:ubiquinone oxidoreductase, 17.2kDa subunit [Source:NCBI gene (formerly Entrezgene);Acc:828804]
identity=64.4; qcov=1.06; evalue=5.3e-74; confidence=high
RiceOs09g0500200
-
identity=58; qcov=1.01; evalue=5.44e-57; confidence=high
GOGO:0005747 (GO:0005747); GO:0006979 (response to oxidative stress); GO:0016020 (membrane); GO:0032981 (mitochondrial respiratory chain complex I assembly)
KEGG-
PfamPF05071 (NDUFA12)
InterPro-
eggNOG-
NRGeneID:131011565

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057795314.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057795314.1
3 Mitochondrion inner membrane 线粒体内膜 0.80000 XP_057795314.1
4 Nucleus 细胞核 0.00000 XP_057795314.1
5 Chromosome 染色体 0.00000 XP_057795314.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:21771639 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:21771649 G A EMS_canonical_SNV CDS_variant 2 C32,C68
Chr2:21774961 G A EMS_canonical_SNV CDS_variant 3 A11,B104,B78
Chr2:21775155 C T EMS_canonical_SNV CDS_variant 3 B114,B12,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795314.1
180 aa
N
1
90
180
NDUFA12
C
PF05071 NDUFA12 17-84 aa
XP_057795315.1
180 aa
N
1
90
180
NDUFA12
C
PF05071 NDUFA12 17-84 aa
XP_057795316.1
180 aa
N
1
90
180
NDUFA12
C
PF05071 NDUFA12 17-84 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795314.1 Pfam PF05071 NDUFA12 Family 17 84 1.2e-10 42.8 NADH ubiquinone oxidoreductase subunit NDUFA12
XP_057795315.1 Pfam PF05071 NDUFA12 Family 17 84 1.2e-10 42.8 NADH ubiquinone oxidoreductase subunit NDUFA12
XP_057795316.1 Pfam PF05071 NDUFA12 Family 17 84 1.2e-10 42.8 NADH ubiquinone oxidoreductase subunit NDUFA12

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057939332.1
GCACAGCACAGCAGATGATCCATTCCCCACAAACACACCCACATAAGTCCATAACTCACACACACATTAACACACAAATCACACGTACACACAATCAGACGCACACACAAAACTCACGCACAAACCCTCCCCTCCCTTTTCTGCTGCACGCCGCCAGCCACCGCCCGGCGCCGCCTTGCCGGCGGGCAACAGCTGCAGCGCCTCCCTTTTCTCCTTCCCAGATCTGGCGCCGCTCAGCCGCTTTTCAATTCTCGGCCTCT...
XM_057939333.1
GCACAGCACAGCAGATGATCCATTCCCCACAAACACACCCACATAAGTCCATAACTCACACACACATTAACACACAAATCACACGTACACACAATCAGACGCACACACAAAACTCACGCACAAACCCTCCCCTCCCTTTTCTGCTGCACGCCGCCAGCCACCGCCCGGCGCCGCCTTGCCGGCGGGCAACAGCTGCAGCGCCTCCCTTTTCTCCTTCCCAGATCTGGCGCCGCTCAGCCGCTTTTCAATTCTCGGCCTCT...

CDS

3 records

下载 CDS FASTA
LOC131011565
ATGTCGCGTCTGTGGGCAAGGGTCGTAGGGTTATTCAGCAATCGAGCATTTGTCGGAATGGATAAAACCGGCAATCGATACTTCACCAAGACTGAGGAAATCGACGGTATAATGAAGGAGAAAAGGTTGGTAATATTTAAAGGAGAGCAGGATCCCACATCCATTCCGGTTGAATGGATATGTTGGCTGAATGGGCAACGTAAAATAGCTCCAACACCAGAGGAAATGGCTCAGCTGGAGGCAAGGAGGGAACGTGTTAA...
LOC131011565
ATGTCGCGTCTGTGGGCAAGGGTCGTAGGGTTATTCAGCAATCGAGCATTTGTCGGAATGGATAAAACCGGCAATCGATACTTCACCAAGACTGAGGAAATCGACGGTATAATGAAGGAGAAAAGGTTGGTAATATTTAAAGGAGAGCAGGATCCCACATCCATTCCGGTTGAATGGATATGTTGGCTGAATGGGCAACGTAAAATAGCTCCAACACCAGAGGAAATGGCTCAGCTGGAGGCAAGGAGGGAACGTGTTAA...

Protein

3 records

下载 Protein FASTA
XP_057795314.1
MSRLWARVVGLFSNRAFVGMDKTGNRYFTKTEEIDGIMKEKRLVIFKGEQDPTSIPVEWICWLNGQRKIAPTPEEMAQLEARRERVKLNVALLKKEEEERKAREGKAPKIGKTTGPDLKSFIQQFPTDSEGKKIEAASDSKDVRSDQGFEGSREKKEEPELSEPTGSGESFRPGTWQPPM
XP_057795315.1
MSRLWARVVGLFSNRAFVGMDKTGNRYFTKTEEIDGIMKEKRLVIFKGEQDPTSIPVEWICWLNGQRKIAPTPEEMAQLEARRERVKLNVALLKKEEEERKAREGKAPKIGKTTGPDLKSFIQQFPTDSEGKKIEAASDSKDVRSDQGFEGSREKKEEPELSEPTGSGESFRPGTWQPPM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器