当前解析结果
SmilChr02G001186| 统一新 Gene ID | SmilChr02G001186 |
|---|---|
| 名称 | SmilChr02G001186 |
| 描述 | uncharacterized SmilChr02G001186 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 21769337 - 21775497 / + |
| NCBI Gene ID | LOC131011565 |
|---|---|
| GeneID | 131011565 |
| locus_tag | - |
| NCBI Name | LOC131011565 |
| 原始查询 | LOC131011565 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NADH:ubiquinone oxidoreductase, 17.2kDa subunit [Source:NCBI gene (formerly Entrezgene);Acc:828804]; symbol=AT4G26965; hit=AT4G26965; species=arabidopsis; confidence=high |
| 产物 | NADH:ubiquinone oxidoreductase, 17.2kDa subunit [Source:NCBI gene (formerly Entrezgene);Acc:828804]; symbol=AT4G26965; hit=AT4G26965; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G26965 (AT4G26965)NADH:ubiquinone oxidoreductase, 17.2kDa subunit [Source:NCBI gene (formerly Entrezgene);Acc:828804] identity=64.4; qcov=1.06; evalue=5.3e-74; confidence=high |
| Rice | Os09g0500200- identity=58; qcov=1.01; evalue=5.44e-57; confidence=high |
| GO | GO:0005747 (GO:0005747); GO:0006979 (response to oxidative stress); GO:0016020 (membrane); GO:0032981 (mitochondrial respiratory chain complex I assembly) |
| KEGG | - |
| Pfam | PF05071 (NDUFA12) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011565 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057795314.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057795314.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057795314.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795314.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795314.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:21771639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:21771649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr2:21774961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B104,B78 |
Chr2:21775155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B12,C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795314.1PF05071
NDUFA12 17-84 aa
XP_057795315.1PF05071
NDUFA12 17-84 aa
XP_057795316.1PF05071
NDUFA12 17-84 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795314.1 |
Pfam | PF05071 |
NDUFA12 | Family | 17 | 84 | 1.2e-10 | 42.8 | NADH ubiquinone oxidoreductase subunit NDUFA12 |
XP_057795315.1 |
Pfam | PF05071 |
NDUFA12 | Family | 17 | 84 | 1.2e-10 | 42.8 | NADH ubiquinone oxidoreductase subunit NDUFA12 |
XP_057795316.1 |
Pfam | PF05071 |
NDUFA12 | Family | 17 | 84 | 1.2e-10 | 42.8 | NADH ubiquinone oxidoreductase subunit NDUFA12 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。