Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001201

染色体: Chr02 坐标: 22150882-22155610 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001201
名称SmilChr02G001201
描述protein METABOLIC NETWORK MODULATOR 1
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向22150882 - 22155610 / +

ID 对照

NCBI Gene IDLOC131011577
GeneID131011577
locus_tag-
NCBI NameLOC131011577
原始查询LOC131011577

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein METABOLIC NETWORK MODULATOR 1
产物protein METABOLIC NETWORK MODULATOR 1
ArabidopsisAT5G54930 (AT5G54930)
AT hook motif-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835584]
identity=33; qcov=0.907; evalue=3.5e-30; confidence=low
Rice-
-
GO-
KEGG-
PfamPF27637 (MNM1_beta)
InterPro-
eggNOG-
NRGeneID:131011577

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057795329.1
2 Chromosome 染色体 0.00000 XP_057795329.1
3 Centromere 着丝粒 0.00000 XP_057795329.1
4 Chromatin 染色质 0.00000 XP_057795329.1
5 Telomere 端粒 0.00000 XP_057795329.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:22154127 G A EMS_canonical_SNV CDS_variant 1 B26
Chr2:22154263 G A EMS_canonical_SNV CDS_variant 1 B135
Chr2:22154465 C T EMS_canonical_SNV CDS_variant 4 B57,B68,B72,D3
Chr2:22154682 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:22154702 C T EMS_canonical_SNV CDS_variant 5 B13,B16,B65,B89,C46
Chr2:22154937 C T EMS_canonical_SNV CDS_variant 1 B107
Chr2:22155048 C T EMS_canonical_SNV CDS_variant 3 A19,B107,B74
Chr2:22155181 G A EMS_canonical_SNV CDS_variant 2 B135,C85
Chr2:22155248 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795329.1
381 aa
N
1
190
381
MNM1_beta
C
PF27637 MNM1_beta 64-100 aa
XP_057795330.1
381 aa
N
1
190
381
MNM1_beta
C
PF27637 MNM1_beta 64-100 aa
XP_057795331.1
378 aa
N
1
189
378
MNM1_beta
C
PF27637 MNM1_beta 64-100 aa
XP_057795332.1
378 aa
N
1
189
378
MNM1_beta
C
PF27637 MNM1_beta 64-100 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795329.1 Pfam PF27637 MNM1_beta Domain 64 100 2.1e-21 75.9 Metabolic network modulator 1 small beta sheet domain
XP_057795330.1 Pfam PF27637 MNM1_beta Domain 64 100 2.1e-21 75.9 Metabolic network modulator 1 small beta sheet domain
XP_057795331.1 Pfam PF27637 MNM1_beta Domain 64 100 2.1e-21 75.9 Metabolic network modulator 1 small beta sheet domain
XP_057795332.1 Pfam PF27637 MNM1_beta Domain 64 100 2.1e-21 75.9 Metabolic network modulator 1 small beta sheet domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057939347.1
TCAATTATTAAAAAACTCACTTGAACTAAAAAATCTAAATAAAATTTAATGGACTTAAATTTTGTGATAATTTTTTTTAATTTCCTCACATTTAAAAGTAAAGAAGTGGCATCGAAAATTGCTCAAAAAATCCACTAACTATCAAAACTAAGCATATCAAAATGAAAATGTAAACTCCAAAACTTTTTTCTTTCAAAAAAAAATGTGAACTCCAAAACTAAGCACACGAAATTTGCTCTGAAAATCCACTAAGCACATGA...
XM_057939346.1
TCAATTATTAAAAAACTCACTTGAACTAAAAAATCTAAATAAAATTTAATGGACTTAAATTTTGTGATAATTTTTTTTAATTTCCTCACATTTAAAAGTAAAGAAGTGGCATCGAAAATTGCTCAAAAAATCCACTAACTATCAAAACTAAGCATATCAAAATGAAAATGTAAACTCCAAAACTTTTTTCTTTCAAAAAAAAATGTGAACTCCAAAACTAAGCACACGAAATTTGCTCTGAAAATCCACTAAGCACATGA...

CDS

4 records

下载 CDS FASTA
LOC131011577
ATGAATCAATATAACCAAGGGGAAGGCTCAAGTGGCCTTTCTATCCTTCCATTAAAGCGTAGACGTGGTCGTCCTCGCAAAGATCCGAGCTTAAAACGTGCACAAGCTGCTCATGCACCACCTGGTTTTGAAGGAGCTAAAGAATACCATCCCCAGAGAGCTGATGGAGTCAACAGTATGGTGGGCCAGGCAGTAAGTGGTGTTGTTGAGGCCACATTTGATGCTGGTTATCTGCTTACTGTTCGAATTGGAAATTCCAC...
LOC131011577
ATGAATCAATATAACCAAGGGGAAGGCTCAAGTGGCCTTTCTATCCTTCCATTAAAGCGTAGACGTGGTCGTCCTCGCAAAGATCCGAGCTTAAAACGTGCACAAGCTGCTCATGCACCACCTGGTTTTGAAGGAGCTAAAGAATACCATCCCCAGAGAGCTGATGGAGTCAACAGTATGGTGGGCCAGGCAGTAAGTGGTGTTGTTGAGGCCACATTTGATGCTGGTTATCTGCTTACTGTTCGAATTGGAAATTCCAC...

Protein

4 records

下载 Protein FASTA
XP_057795329.1
MNQYNQGEGSSGLSILPLKRRRGRPRKDPSLKRAQAAHAPPGFEGAKEYHPQRADGVNSMVGQAVSGVVEATFDAGYLLTVRIGNSTTKLRGVVFKPGHYVPVTAENDVAPHLQMIRRNDVQLPAEKHGWSRRQKLAIQAGALVPSKRKSRTQLAAPSVPPVGARGSVVPVVLQPISFQNGVTSNQMPSDTSRTPHVMSFGDRDVHMVEPLSMLPPDKSIPVSQLFLGTQPHTRHQSSQGTEQNDNNPFIGGGTSEVGQG...
XP_057795330.1
MNQYNQGEGSSGLSILPLKRRRGRPRKDPSLKRAQAAHAPPGFEGAKEYHPQRADGVNSMVGQAVSGVVEATFDAGYLLTVRIGNSTTKLRGVVFKPGHYVPVTAENDVAPHLQMIRRNDVQLPAEKHGWSRRQKLAIQAGALVPSKRKSRTQLAAPSVPPVGARGSVVPVVLQPISFQNGVTSNQMPSDTSRTPHVMSFGDRDVHMVEPLSMLPPDKSIPVSQLFLGTQPHTRHQSSQGTEQNDNNPFIGGGTSEVGQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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