当前解析结果
SmilChr02G001203| 统一新 Gene ID | SmilChr02G001203 |
|---|---|
| 名称 | SmilChr02G001203 |
| 描述 | DEAD-box ATP-dependent RNA helicase 32 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 22175169 - 22180780 / + |
| NCBI Gene ID | LOC131011579 |
|---|---|
| GeneID | 131011579 |
| locus_tag | - |
| NCBI Name | LOC131011579 |
| 原始查询 | LOC131011579 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DEAD-box ATP-dependent RNA helicase 32 |
| 产物 | DEAD-box ATP-dependent RNA helicase 32 |
| Arabidopsis | AT5G54910 (AT5G54910)DEA(D/H)-box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835582] identity=59; qcov=0.999; evalue=0; confidence=high |
| Rice | Os07g0517000 (OsRH32)- identity=50.5; qcov=0.73; evalue=3.71e-159; confidence=high |
| GO | GO:0003676 (nucleic acid binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006364 (rRNA processing) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF13959 (CTE_SPB4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011579 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795334.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057795334.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795334.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795334.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795334.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:22175347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B72 |
Chr2:22175372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:22175411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B28,B72,C24,C9 |
Chr2:22175436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B3,B59,C17,C77 |
Chr2:22175507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:22176590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C85 |
Chr2:22176664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C71 |
Chr2:22177731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B19,B77 |
Chr2:22177827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr2:22177874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:22178595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B132,B53,B71,B93,C20 |
Chr2:22178844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B64,C22,C30,C37,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795334.1PF00270
DEAD 90-261 aa
PF04851
ResIII 109-253 aa
PF00271
Helicase_C 298-407 aa
PF13959
CTE_SPB4 460-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795334.1 |
Pfam | PF00270 |
DEAD | Domain | 90 | 261 | 4.1e-45 | 154.2 | DEAD/DEAH box helicase |
XP_057795334.1 |
Pfam | PF04851 |
ResIII | Family | 109 | 253 | 4.6e-06 | 27.4 | Type III restriction enzyme, res subunit |
XP_057795334.1 |
Pfam | PF00271 |
Helicase_C | Domain | 298 | 407 | 9.5e-25 | 87.7 | Helicase conserved C-terminal domain |
XP_057795334.1 |
Pfam | PF13959 |
CTE_SPB4 | Domain | 460 | 508 | 2.3e-13 | 50.6 | ATP-dependent rRNA helicase SPB4-like, C-terminal extension |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。