Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001208

染色体: Chr02 坐标: 22245375-22249336 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001208
名称SmilChr02G001208
描述uncharacterized SmilChr02G001208
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向22245375 - 22249336 / -

ID 对照

NCBI Gene IDLOC131011584
GeneID131011584
locus_tag-
NCBI NameLOC131011584
原始查询LOC131011584

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述inositol-1,4,5-trisphosphate 5-phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:835578]; symbol=AT5G54870; hit=AT5G54870; species=arabidopsis; confidence=high
产物inositol-1,4,5-trisphosphate 5-phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:835578]; symbol=AT5G54870; hit=AT5G54870; species=arabidopsis; confidence=high
ArabidopsisAT5G54870 (AT5G54870)
inositol-1,4,5-trisphosphate 5-phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:835578]
identity=76; qcov=0.951; evalue=0; confidence=high
RiceOs01g0793500 (P0684C02.6-2)
-
identity=73; qcov=0.921; evalue=0; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131011584

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 0.60000 XP_057795339.1
2 Vacuole 液泡 0.60000 XP_057795339.1
3 Nucleus 细胞核 0.00000 XP_057795339.1
4 Chromosome 染色体 0.00000 XP_057795339.1
5 Centromere 着丝粒 0.00000 XP_057795339.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:22245521 G A EMS_canonical_SNV CDS_variant 1 C72
Chr2:22245649 C T EMS_canonical_SNV CDS_variant 3 B15,B89,C80
Chr2:22245673 G A EMS_canonical_SNV CDS_variant 1 C3
Chr2:22245868 C T EMS_canonical_SNV CDS_variant 3 A19,B74,C54
Chr2:22245919 C T EMS_canonical_SNV CDS_variant 4 B101,B102,B64,B7
Chr2:22245949 C T EMS_canonical_SNV CDS_variant 2 B32,C71
Chr2:22245977 G A EMS_canonical_SNV CDS_variant 2 B101,B108
Chr2:22245986 C T EMS_canonical_SNV CDS_variant 2 B37,B82
Chr2:22247588 C T EMS_canonical_SNV CDS_variant 2 B106,C71
Chr2:22247753 C T EMS_canonical_SNV CDS_variant 4 B14,B71,C62,D11
Chr2:22247798 C T EMS_canonical_SNV CDS_variant 1 C54
Chr2:22248055 C T EMS_canonical_SNV CDS_variant 1 B7

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057939356.1
ATTATCCCTTATTATTATTATAAATGAATCGAGTCTAGTGGGACAGTTGCGCATAACAGAATTTACATTTGCAGAAGGTTTCTTCAAACATCATCAACCTCCCACCGCTATAAAATACTATGAATTGAAAACTCCAAAACCCGAAATAATCCCAGAAAAGGGATTGTTCAATATTTATCTAACAAGATTCTACCGACCCCAATCCCATTCTCTTCCACGATTCCTAGCCATGAAGAAGATCACCACAACCCATCACGTAA...

CDS

1 records

下载 CDS FASTA
LOC131011584
ATGAAGAAGATCACCACAACCCATCACGTAATTCTGCTTTTCTCGGCGATTTTCACCGTTTCCGGCATCCAAACGCTCTCAGTTGAAGCATTGCAAGCGCCGTTTCGCCCCACCGACATATTGCCCCTGCTTCCGCGGCAGGTTTCACGGCCTATTCTGAACGTCCTCAACAACGCCGCCGACCTGCTGCCGTCTTTCGTGGGAGCCGCCACCTCCGACAACGCTTCCGACTTGCAATGGAGAGGAGCTTGCTTTTACGA...

Protein

1 records

下载 Protein FASTA
XP_057795339.1
MKKITTTHHVILLFSAIFTVSGIQTLSVEALQAPFRPTDILPLLPRQVSRPILNVLNNAADLLPSFVGAATSDNASDLQWRGACFYDSTAWLEFHNSSATRFGGGTLHMKLNEAHSWTCMDLYVFATPFRVTWDYYMMSREHTIEFKEWESEAEFEYVKNRGVSIFLMQAGMLGTLQALWEVFPLFTNTEWGENSNIAFLKKHMGASFEERPQPWVTNITVDEIQSGDFLAISKIRGRWGGFETLEKWVTGAYAGHSAVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器