当前解析结果
SmilChr02G001224| 统一新 Gene ID | SmilChr02G001224 |
|---|---|
| 名称 | SmilChr02G001224 |
| 描述 | ATP-dependent DNA helicase Q-like 3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 22520145 - 22523035 / - |
| NCBI Gene ID | LOC131011599 |
|---|---|
| GeneID | 131011599 |
| locus_tag | - |
| NCBI Name | LOC131011599 |
| 原始查询 | LOC131011599 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase Q-like 3 |
| 产物 | ATP-dependent DNA helicase Q-like 3 |
| Arabidopsis | AT4G35740 (RecQl3)DEAD/DEAH box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829727] identity=46.6; qcov=0.603; evalue=1.09e-14; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011599 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057795350.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057795350.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795350.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795350.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795350.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:22520417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B84,C23 |
Chr2:22520421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C27 |
Chr2:22520435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:22520481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:22520506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr2:22520512 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr2:22520512 |
AG |
A |
1bp_deletion | CDS_variant | 1 | D10 |
Chr2:22521088 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B133,B75,C65 |
Chr2:22521088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,B75,C65 |
Chr2:22521123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B59,C48 |
Chr2:22521125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,C51,C56,C60 |
Chr2:22521134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C68,C9,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。