Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001232`

染色体: Chr02 坐标: 22616798-22622085 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001232`
名称	SmilChr02G001232
描述	uncharacterized SmilChr02G001232
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	22616798 - 22622085 / `+`

ID 对照

NCBI Gene ID	`LOC131011607`
GeneID	`131011607`
locus_tag	`-`
NCBI Name	`LOC131011607`
原始查询	`LOC131011607`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841513]; symbol=AT1G50910; hit=AT1G50910; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841513]; symbol=AT1G50910; hit=AT1G50910; species=arabidopsis; confidence=high
Arabidopsis	`AT1G50910` (AT1G50910) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841513] identity=48.8; qcov=0.712; evalue=6.45e-78; confidence=high
Rice	`Os09g0504900` - identity=37.1; qcov=0.889; evalue=3.03e-64; confidence=medium
GO	-
KEGG	-
Pfam	PF14780 (NEPRO_N)
InterPro	-
eggNOG	-
NR	GeneID:131011607

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057795360.1`
2	Nucleus	细胞核	0.40000	`XP_057795360.1`
3	Chromosome	染色体	0.20000	`XP_057795360.1`
4	Spindle pole body	Spindle pole body	0.20000	`XP_057795360.1`
5	Centromere	着丝粒	0.00000	`XP_057795360.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:22618373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:22618631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:22618637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B37,B82,C72
`Chr2:22619351`	`TC`	`T`	1bp_deletion	frameshift_variant	11	A10,B1,B118,B15,B48,B55,C26,C83,D1,D11,D2
`Chr2:22619448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr2:22620126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B9,C26,C41
`Chr2:22620139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B71,C62
`Chr2:22620860`	`GAT`	`G`	2bp_deletion	frameshift_variant	1	C4
`Chr2:22620860`	`GAT`	`G`	2bp_deletion	CDS_variant	1	C4
`Chr2:22620906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C72
`Chr2:22621302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B82
`Chr2:22621330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795360.1

409 aa

204

409

NEPRO_N

PF14780 NEPRO_N 8-167 aa

XP_057795361.1

406 aa

203

406

NEPRO_N

PF14780 NEPRO_N 5-164 aa

XP_057795362.1

406 aa

203

406

NEPRO_N

PF14780 NEPRO_N 5-164 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795360.1`	Pfam	`PF14780`	NEPRO_N	Domain	8	167	2.5e-14	54.1	Nucleolus and neural progenitor protein, N-terminal
`XP_057795361.1`	Pfam	`PF14780`	NEPRO_N	Domain	5	164	3e-14	53.8	Nucleolus and neural progenitor protein, N-terminal
`XP_057795362.1`	Pfam	`PF14780`	NEPRO_N	Domain	5	164	3e-14	53.8	Nucleolus and neural progenitor protein, N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939378.1
TCATATTTGATTACGTGTATACATGTATCATTTTTATGTCTATGATTTAATCATGGGACTCAAACTTCTATCCTATCAATTCATGTTATAAGTTTATGATTTGTCATGGGGCTCAAGTCTCTACCCCATCAACTCAAGCTATGATTAAGTTTTCGTCAAGGGGCTTAAGTAGGTCTCTACCCTATTGGCTCATGTTTTGCAAGTATTACATGTCATGATAACATGATTTGATTATATAATTAACGTATATGAATAATTGT...

XM_057939379.1
GAGACTTGGCCCACCAATACGAAATTGATTGGGGTGCTCTCTCTCTCTCCCTCACGTATTGTGGACTCTATCAAAGAATCTACACCAGTCTCTCTCCAATTTAATTTGAGGTTCCCCACTAGAGAAGCAGCAGCAATCTGCACAAACGAATACATATAATCTTTTCATCTCCCAAAGATTCCTCATCCACGAAACGGATTTACTCACAGCTAAAAATTAAGAAATCGGGTATTTTGTTTATGCAGTGCCCGACGAGTACC...

CDS

3 records

下载 CDS FASTA

LOC131011607
ATGAGCTTGATGGGTTCAGACATCAAAACAGTTGAACAGAGATTGAAGTCTTTCACCAGTCAGCTTCACACGGAATGTGGAATTCTAGAGAGGCTTGTGTATAAACACAAGAATCAACATCGAAGATGCTCTTATTTTCAATACATTCTCAAGGTTAGAAGGGATTTGCAGCTTCTGAAATTAGGTGACCTGGAAGAGGTTTTGGAGTCGTCTTTTCTGGTGATAAATGGCGATAGGCCAAAACAAAAGGTTCAGCTTTT...

LOC131011607
ATGGGTTCAGACATCAAAACAGTTGAACAGAGATTGAAGTCTTTCACCAGTCAGCTTCACACGGAATGTGGAATTCTAGAGAGGCTTGTGTATAAACACAAGAATCAACATCGAAGATGCTCTTATTTTCAATACATTCTCAAGGTTAGAAGGGATTTGCAGCTTCTGAAATTAGGTGACCTGGAAGAGGTTTTGGAGTCGTCTTTTCTGGTGATAAATGGCGATAGGCCAAAACAAAAGGTTCAGCTTTTAGAAGGTTT...

Protein

3 records

下载 Protein FASTA

XP_057795360.1
MSLMGSDIKTVEQRLKSFTSQLHTECGILERLVYKHKNQHRRCSYFQYILKVRRDLQLLKLGDLEEVLESSFLVINGDRPKQKVQLLEGLKRRKTNSGKYNFLERLLGVTRLLSQIVEPLLKAAMEISMLLARSFFMKFSLAVLAVLARIRVLVQQMLFDAVVLYNTVSSLSQKEQSIKLNQEGFEVFREYFPRKEEVRILLECIWQKDKFVLVETTHKSETTSQEKDDPGDFSLSTPQILYENIEVLLGVDETGAATSV...

XP_057795361.1
MGSDIKTVEQRLKSFTSQLHTECGILERLVYKHKNQHRRCSYFQYILKVRRDLQLLKLGDLEEVLESSFLVINGDRPKQKVQLLEGLKRRKTNSGKYNFLERLLGVTRLLSQIVEPLLKAAMEISMLLARSFFMKFSLAVLAVLARIRVLVQQMLFDAVVLYNTVSSLSQKEQSIKLNQEGFEVFREYFPRKEEVRILLECIWQKDKFVLVETTHKSETTSQEKDDPGDFSLSTPQILYENIEVLLGVDETGAATSVHPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器