Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002567

染色体: Chr02 坐标: 44668566-44675433 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002567
名称SmilChr02G002567
描述protein S-acyltransferase 8-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向44668566 - 44675433 / +

ID 对照

NCBI Gene IDLOC131011632
GeneID131011632
locus_tag-
NCBI NameLOC131011632
原始查询LOC131011632

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein S-acyltransferase 8-like
产物protein S-acyltransferase 8-like
ArabidopsisAT4G24630 (AT4G24630)
DHHC-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:828565]
identity=64.5; qcov=1.02; evalue=0; confidence=high
RiceOs01g0868200
-
identity=65.2; qcov=0.973; evalue=0; confidence=high
GOGO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus); GO:0006612 (protein targeting to membrane); GO:0018230 (peptidyl-L-cysteine S-palmitoylation); GO:0019706 (protein-cysteine S-palmitoyltransferase activity)
KEGG-
PfamPF01529 (DHHC)
InterPro-
eggNOG-
NRGeneID:131011632

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057795387.1
2 Trans-golgi network Trans-golgi network 0.20000 XP_057795387.1
3 Vacuole 液泡 0.20000 XP_057795387.1
4 Vacuole membrane 液泡膜 0.20000 XP_057795387.1
5 Nucleus 细胞核 0.00000 XP_057795387.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:44671509 C T EMS_canonical_SNV CDS_variant 5 B42,B43,B70,C57,C58
Chr2:44673251 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:44673518 C T EMS_canonical_SNV CDS_variant 2 C53,D3
Chr2:44673671 C T EMS_canonical_SNV CDS_variant 1 C30
Chr2:44673700 C T EMS_canonical_SNV CDS_variant 1 B35
Chr2:44673748 TCA T 2bp_deletion frameshift_variant 1 B28
Chr2:44673748 TCA T 2bp_deletion CDS_variant 1 B28
Chr2:44674729 GA G 1bp_deletion frameshift_variant 1 B127
Chr2:44674729 GA G 1bp_deletion CDS_variant 1 B127
Chr2:44674872 G A EMS_canonical_SNV CDS_variant 2 C30,C40
Chr2:44674918 G A EMS_canonical_SNV CDS_variant 1 B84
Chr2:44675008 G A EMS_canonical_SNV CDS_variant 1 C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795387.1
413 aa
N
1
206
413
DHHC
C
PF01529 DHHC 138-262 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795387.1 Pfam PF01529 DHHC Family 138 262 3.6e-40 137.8 DHHC palmitoyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057939404.1
AAAATTCCAAAATAAGTGAATTTATTTAGGTTTGTCAAATTAAAGTGGGAAAAAAAAATAAAGAACCCATTTCCCCAAAAACATTCCAAAAAATAAAAAAATAGTAAAATTGGCATCGCAGGCTGAAAACTCGAAAACCTCACAGATCAGAAAAGCGAAGACGAAGACCCCTCAACTATTCAAAATCCCTAAAAAACCCCATCTTAAATTCGCTGCATTTTCAAATTCAACCTCCTCTAATTATTACGCACAAAAACAAA...

CDS

1 records

下载 CDS FASTA
LOC131011632
ATGGCTAAGCGCGTGCACGAAGTATGGAAGGGTAACAATATCTTTTTTCTGGGTGGGAGGTTGATTTTTGGCCCTGATGCAAGATCACTGCTTGTCACCTTATTGTTGATCATCGCCCCTGTTGTTATCTTTTGTGTTTTTGTCGCAAGGCATCTTCGTCATCAATTCTCGACCTATAATGCAGGATATGCAATCATTGTAGCTGCTATAGTCTTCACCATTCATGTGCTAGGGTTGTTGCTTCTTACCTCATCCCGAGA...

Protein

1 records

下载 Protein FASTA
XP_057795387.1
MAKRVHEVWKGNNIFFLGGRLIFGPDARSLLVTLLLIIAPVVIFCVFVARHLRHQFSTYNAGYAIIVAAIVFTIHVLGLLLLTSSRDPGIVPRNSHPPEEEFRYDTSASVEVGGRQTPSLQFPRTKEVMVNGLPIRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGMRNYRYFFCFVSSAALLCIYVFSISAFYIKVLMDDHKGTVWKAMKESPASVILMGYSFISLWFVGGLTGFHLYLISTNQTTYEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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