当前解析结果
SmilChr02G002594| 统一新 Gene ID | SmilChr02G002594 |
|---|---|
| 名称 | SmilChr02G002594 |
| 描述 | protein LAZ1 homolog 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 45096274 - 45099182 / - |
| NCBI Gene ID | LOC131011650 |
|---|---|
| GeneID | 131011650 |
| locus_tag | - |
| NCBI Name | LOC131011650 |
| 原始查询 | LOC131011650 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein LAZ1 homolog 1-like |
| 产物 | protein LAZ1 homolog 1-like |
| Arabidopsis | AT1G77220 (AT1G77220)organic solute transporter ostalpha protein (DUF300) [Source:NCBI gene (formerly Entrezgene);Acc:844058] identity=68.2; qcov=1.02; evalue=2.84e-128; confidence=high |
| Rice | Os05g0516900- identity=62; qcov=1; evalue=1.64e-109; confidence=high |
| GO | GO:0005215 (transporter activity); GO:0006810 (transport) |
| KEGG | - |
| Pfam | PF03619 (Solute_trans_a) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011650 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795409.1 |
| 2 | Endosome | 内体 | 0.60000 | XP_057795410.1 |
| 3 | Endosome membrane | 内体膜 | 0.60000 | XP_057795410.1 |
| 4 | Vesicle | 囊泡 | 0.40000 | XP_057795410.1 |
| 5 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057795410.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:45096641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr2:45096850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:45096941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr2:45097512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C86,D9 |
Chr2:45097565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C58 |
Chr2:45097573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B11,B48,B73,B89 |
Chr2:45097692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr2:45097697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,C58,D7 |
Chr2:45098132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:45098177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr2:45098228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795409.1PF03619
Solute_trans_a 20-185 aa
XP_057795410.1PF03619
Solute_trans_a 1-132 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795409.1 |
Pfam | PF03619 |
Solute_trans_a | Family | 20 | 185 | 8e-55 | 186.7 | Organic solute transporter Ostalpha |
XP_057795410.1 |
Pfam | PF03619 |
Solute_trans_a | Family | 1 | 132 | 4e-43 | 148.4 | Organic solute transporter Ostalpha |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。