当前解析结果
SmilChr02G002604| 统一新 Gene ID | SmilChr02G002604 |
|---|---|
| 名称 | SmilChr02G002604 |
| 描述 | early nodulin-like protein 14 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 45179813 - 45182605 / + |
| NCBI Gene ID | LOC131011657 |
|---|---|
| GeneID | 131011657 |
| locus_tag | - |
| NCBI Name | LOC131011657 |
| 原始查询 | LOC131011657 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | early nodulin-like protein 14 |
| 产物 | early nodulin-like protein 14 |
| Arabidopsis | AT1G21090 (AT1G21090)Cupredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838705] identity=50.2; qcov=1; evalue=2.17e-66; confidence=high |
| Rice | Os01g0963800- identity=55.3; qcov=0.177; evalue=4.02e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011657 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795417.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057795417.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795417.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795417.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795417.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:45180362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B93,C2,D4 |
Chr2:45180389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B53,B71,B98,C82 |
Chr2:45180773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,D10 |
Chr2:45180776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:45180851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B37,B53,B71,C82 |
Chr2:45182417 |
A |
AGT |
2bp_insertion | stop_gained,frameshift_variant | 8 | A20,B124,B18,B23,B52,C31,C75,C87 |
Chr2:45182440 |
TAA |
T |
2bp_deletion | frameshift_variant | 1 | D4 |
Chr2:45182440 |
TAA |
T |
2bp_deletion | CDS_variant | 1 | D4 |
Chr2:45182444 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr2:45182444 |
GA |
G |
1bp_deletion | CDS_variant | 1 | D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。