Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002626`

染色体: Chr02 坐标: 45602500-45611229 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002626`
名称	SmilChr02G002626
描述	uncharacterized SmilChr02G002626
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	45602500 - 45611229 / `+`

ID 对照

NCBI Gene ID	`LOC131011673`
GeneID	`131011673`
locus_tag	`-`
NCBI Name	`LOC131011673`
原始查询	`LOC131011673`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:844008]; symbol=AT1G76740; hit=AT1G76740; species=arabidopsis; confidence=weak
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:844008]; symbol=AT1G76740; hit=AT1G76740; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G76740` (AT1G76740) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:844008] identity=40.1; qcov=0.061; evalue=3.39e-15; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131011673

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795434.1`
2	Chromosome	染色体	0.40000	`XP_057795434.1`
3	Nucleoplasm	核质	0.20000	`XP_057795434.1`
4	Centromere	着丝粒	0.00000	`XP_057795434.1`
5	Chromatin	染色质	0.00000	`XP_057795434.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:45602630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B133,B136,B81
`Chr2:45602701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:45603618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C24,C64,C7
`Chr2:45603624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:45603719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,B61
`Chr2:45604384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B95,C14,C34
`Chr2:45604513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:45604799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:45605064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr2:45605121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B37,B53,B71,C82
`Chr2:45605288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr2:45605388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057939451.1
TAGTTTTCACTCAAAACATTTAATTCAAACATTTCTTGGAAGAGAGCGCATTTGATGATATAAAAGCGAAAACTCTCTATCTAATTGTACTAGATGTAGGGATGGATTTCCACTGTATGAAGCGCAAACAGCTGCAGGCATTATGCAAGAAGCACAAGATTCCGGCCAATTTGTCCAATCTCCAGATGATCAACCGGCTTACGGACTTTCTTCAGGCGCAGGAAGATAATGTGAGCGAAATCGAATCGACTGGCGAGGTT...

XM_057939452.1
TAGTTTTCACTCAAAACATTTAATTCAAACATTTCTTGGAAGAGAGCGCATTTGATGATATAAAAGCGAAAACTCTCTATCTAATTGTACTAGATGTAGGGATGGATTTCCACTGTATGAAGCGCAAACAGCTGCAGGCATTATGCAAGAAGCACAAGATTCCGGCCAATTTGTCCAATCTCCAGATGATCAACCGGCTTACGGACTTTCTTCAGGCGCAGGAAGATAATGTGAGCGAAATCGAATCGACTGGCGAGGTT...

CDS

5 records

下载 CDS FASTA

LOC131011673
ATGGATTTCCACTGTATGAAGCGCAAACAGCTGCAGGCATTATGCAAGAAGCACAAGATTCCGGCCAATTTGTCCAATCTCCAGATGATCAACCGGCTTACGGACTTTCTTCAGGCGCAGGAAGATAATGTGAGCGAAATCGAATCGACTGGCGAGGTTGTGAGTAAAACAGGTAAGAAAGTACGATTTAGTCCGGAGCATGAACTGATTGAGTTTACCAGATCTCCTGAAATAATAAAAAGAAGTAGGAGGAATTCTAT...

Protein

5 records

下载 Protein FASTA

XP_057795434.1
MDFHCMKRKQLQALCKKHKIPANLSNLQMINRLTDFLQAQEDNVSEIESTGEVVSKTGKKVRFSPEHELIEFTRSPEIIKRSRRNSMGRHSSTMQTGELKLMEAEVKQKKRGRKAVKCNDGQKIASAVDSFEDGALETEEGDVVRSGRMTRLRGKLVAEGVSNASKREGNGDDKRGEKAPDKVKNDERQEEIVENHSRVTRSRAQKLTEAPAAEEKRGRKAVKNIGKAAPVRAETGDNADSLSKRGDESEGKSDERRKGN...

XP_057795435.1
MDFHCMKRKQLQALCKKHKIPANLSNLQMINRLTDFLQAQEDNVSEIESTGEVVSKTGKKVRFSPEHELIEFTRSPEIIKRSRRNSMGRHSSTMQTGELKLMEAEVKQKKRGRKAVKCNDGQKIASAVDSFEDGALETEEGDVVRSGRMTRLRGKLVAEGVSNASKREGNGDDKRGEKAPDKVKNDERQEEIVENHSRVTRSRAQKLTEAPAAEEKRGRKAVKNIGKAAPVRAETGDNADSLSKRGDESEGKSDERRKGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器