当前解析结果
SmilChr02G002639| 统一新 Gene ID | SmilChr02G002639 |
|---|---|
| 名称 | SmilChr02G002639 |
| 描述 | protein LAZ1 homolog 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 45794741 - 45798763 / - |
| NCBI Gene ID | LOC131011682 |
|---|---|
| GeneID | 131011682 |
| locus_tag | - |
| NCBI Name | LOC131011682 |
| 原始查询 | LOC131011682 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein LAZ1 homolog 1-like |
| 产物 | protein LAZ1 homolog 1-like |
| Arabidopsis | AT1G77220 (AT1G77220)organic solute transporter ostalpha protein (DUF300) [Source:NCBI gene (formerly Entrezgene);Acc:844058] identity=68; qcov=0.942; evalue=3.95e-156; confidence=high |
| Rice | Os05g0516900- identity=63.9; qcov=0.938; evalue=1.9e-143; confidence=high |
| GO | GO:0005215 (transporter activity); GO:0006810 (transport) |
| KEGG | - |
| Pfam | PF03619 (Solute_trans_a) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011682 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057795453.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057795453.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057795452.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057795453.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057795453.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:45795233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr2:45795270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B113 |
Chr2:45795310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B113,B50,C18 |
Chr2:45795355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:45795393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:45795675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,B21,C58 |
Chr2:45795952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C76 |
Chr2:45796005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr2:45796023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B138,B25,B44 |
Chr2:45796073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C50,C76 |
Chr2:45796079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr2:45796106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B115,B55,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795452.1PF03619
Solute_trans_a 44-321 aa
XP_057795453.1PF03619
Solute_trans_a 44-306 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795452.1 |
Pfam | PF03619 |
Solute_trans_a | Family | 44 | 321 | 9.6e-88 | 294.7 | Organic solute transporter Ostalpha |
XP_057795453.1 |
Pfam | PF03619 |
Solute_trans_a | Family | 44 | 306 | 9.7e-82 | 275.0 | Organic solute transporter Ostalpha |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。