当前解析结果
SmilChr02G002647| 统一新 Gene ID | SmilChr02G002647 |
|---|---|
| 名称 | SmilChr02G002647 |
| 描述 | ubiquitin carboxyl-terminal hydrolase 18-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 45863744 - 45866973 / + |
| NCBI Gene ID | LOC131011689 |
|---|---|
| GeneID | 131011689 |
| locus_tag | - |
| NCBI Name | LOC131011689 |
| 原始查询 | LOC131011689 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin carboxyl-terminal hydrolase 18-like |
| 产物 | ubiquitin carboxyl-terminal hydrolase 18-like |
| Arabidopsis | AT4G31670 (UBP18)ubiquitin-specific protease 18 [Source:NCBI gene (formerly Entrezgene);Acc:829295] identity=43.7; qcov=0.425; evalue=4.14e-09; confidence=low |
| Rice | Os06g0654000- identity=41.8; qcov=0.473; evalue=1.06e-08; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011689 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795460.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057795464.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057795462.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795460.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795460.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:45864072 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B130,D4 |
Chr2:45864072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,D4 |
Chr2:45864127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,D4 |
Chr2:45864148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr2:45864175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,D4 |
Chr2:45865128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,B21 |
Chr2:45865277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,C60 |
Chr2:45865337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr2:45865798 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B32,B36,C29,C65,C82,C9,D3 |
Chr2:45865905 |
TCA |
T |
2bp_deletion | frameshift_variant | 21 | A25,B100,B11,B110,B123,B129,B134,B14,B3,B42,B60,C14,C16,C26,C34,C57,C59,C7,C70,C76,C87 |
Chr2:45866128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr2:45866176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B122,C50 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。