当前解析结果
SmilChr02G002657| 统一新 Gene ID | SmilChr02G002657 |
|---|---|
| 名称 | SmilChr02G002657 |
| 描述 | protein MITOFERRINLIKE 1, chloroplastic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46011853 - 46013394 / - |
| NCBI Gene ID | LOC131011699 |
|---|---|
| GeneID | 131011699 |
| locus_tag | - |
| NCBI Name | LOC131011699 |
| 原始查询 | LOC131011699 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein MITOFERRINLIKE 1, chloroplastic |
| 产物 | protein MITOFERRINLIKE 1%2C chloroplastic |
| Arabidopsis | AT5G42130 (Mfl1)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:834218] identity=68.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os01g0964900 (P0458E05.12)- identity=58.8; qcov=0.666; evalue=2.54e-100; confidence=high |
| GO | GO:0000095 (S-adenosyl-L-methionine transmembrane transporter activity); GO:0005743 (mitochondrial inner membrane) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011699 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057795475.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057795475.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.80000 | XP_057795475.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.40000 | XP_057795475.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057795475.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46012270 |
G |
GCC |
2bp_insertion | frameshift_variant | 1 | B130 |
Chr2:46012270 |
G |
GCC |
2bp_insertion | CDS_variant | 1 | B130 |
Chr2:46012429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B108,B5 |
Chr2:46012457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr2:46012561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:46012921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B5,C48,C54,C87 |
Chr2:46013074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr2:46013186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:46013226 |
TGC |
T |
2bp_deletion | frameshift_variant | 63 | A10,A13,A18,B10,B104,B105,B108,B109,B112,B115,B118,B119,B120,B123,B126,B134,B137,B139,B14,B16,B21,B26,B28,B33,B34,B4,B61,B62,B64,B66,B68,B69,B75,B78,B81,B82,B83,B87,B97,C11,C12,C16,C17,C20,C21,C23,C26,C3,C35,C37,C38,C39,C40,C42,C43,C45,C57,C63,C69,C82,C9,D4,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795475.1PF00153
Mito_carr 116-198 aa
PF00153
Mito_carr 211-289 aa
PF00153
Mito_carr 296-392 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795475.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 116 | 198 | 1.5e-55 | 185.6 | Mitochondrial carrier protein |
XP_057795475.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 211 | 289 | 1.5e-55 | 185.6 | Mitochondrial carrier protein |
XP_057795475.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 296 | 392 | 1.5e-55 | 185.6 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。