Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002676`

染色体: Chr02 坐标: 46345611-46348957 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002676`
名称	SmilChr02G002676
描述	serine decarboxylase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46345611 - 46348957 / `+`

ID 对照

NCBI Gene ID	`LOC131011710`
GeneID	`131011710`
locus_tag	`-`
NCBI Name	`LOC131011710`
原始查询	`LOC131011710`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine decarboxylase-like
产物	serine decarboxylase-like
Arabidopsis	`AT1G43710` (EMB1075) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840958] identity=78.6; qcov=0.988; evalue=0; confidence=high
Rice	`Os02g0541325` - identity=85.9; qcov=0.813; evalue=0; confidence=high
GO	GO:0016831 (carboxy-lyase activity); GO:0019752 (carboxylic acid metabolic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00282 (Pyridoxal_deC)
InterPro	-
eggNOG	-
NR	GeneID:131011710

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795491.1`
2	Cytosol	细胞质基质	1.00000	`XP_057795491.1`
3	Nucleus	细胞核	0.40000	`XP_057795492.1`
4	Nucleoplasm	核质	0.40000	`XP_057795492.1`
5	Chromosome	染色体	0.00000	`XP_057795491.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46345712`	`G`	`GTA`	2bp_insertion	frameshift_variant	6	A20,B122,B99,C43,C60,C63
`Chr2:46345720`	`A`	`AT`	1bp_insertion	stop_gained,frameshift_variant	4	A3,B55,B60,C26
`Chr2:46345720`	`A`	`AT`	1bp_insertion	CDS_variant	4	A3,B55,B60,C26
`Chr2:46345727`	`T`	`TA`	1bp_insertion	frameshift_variant	1	C2
`Chr2:46345727`	`T`	`TA`	1bp_insertion	CDS_variant	1	C2
`Chr2:46345925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B20,C36,C72
`Chr2:46346039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,A25,A5,B41
`Chr2:46346223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B57,B82,B87
`Chr2:46347118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B48,B6,B67,C15,C60
`Chr2:46347134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:46348326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B3,B31,C64,C66
`Chr2:46348351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,C43,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795491.1

526 aa

263

526

Pyridoxal_deC

PF00282 Pyridoxal_deC 236-449 aa

XP_057795492.1

487 aa

244

487

Pyridoxal_deC

PF00282 Pyridoxal_deC 197-410 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795491.1`	Pfam	`PF00282`	Pyridoxal_deC	Domain	236	449	6.9e-24	85.0	Pyridoxal-dependent decarboxylase conserved domain
`XP_057795492.1`	Pfam	`PF00282`	Pyridoxal_deC	Domain	197	410	5.4e-24	85.3	Pyridoxal-dependent decarboxylase conserved domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939508.1
GCATTTTGCATTTTGCATTTTGCAGTTTAGCATACAGGATACGACACCATTTGAAGCGTTTTATCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTATATATATAAATCTAAGACAAAGCAGCGCACTTGCTCTTCTTCACCTTTCATCTCCGCCGCCTCTTTCGCCCATTTTTCGCGCTTTTCCAAGTATTTGCTCGCAGCTAGGGTGATGGTTGGGAGCAGCATTGAGCTCGAGGCAACGATGTCCTCCAA...

XM_057939509.1
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTATATATATAAATCTAAGACAAAGCAGCGCACTTGCTCTTCTTCACCTTTCATCTCCGCCGCCTCTTTCGCCCATTTTTCGCGCTTTTCCAAGTATTTGCTCGCAGGCATTGGGCAGCTAGGGTGATGGTTGGGAGCAGCATTGAGCTCGAGGCAACGATGTCCTCCAACGGATCTTTGGTTAACGGAAAGGCTTTGGATCGGATGACCGCGGCGGAAGAACTAGCC...

CDS

2 records

下载 CDS FASTA

LOC131011710
ATGTATATATATAAATCTAAGACAAAGCAGCGCACTTGCTCTTCTTCACCTTTCATCTCCGCCGCCTCTTTCGCCCATTTTTCGCGCTTTTCCAAGTATTTGCTCGCAGCTAGGGTGATGGTTGGGAGCAGCATTGAGCTCGAGGCAACGATGTCCTCCAACGGATCTTTGGTTAACGGAAAGGCTTTGGATCGGATGACCGCGGCGGAAGAACTAGCCTTTGATCCGACGGAGGTGGTATCGGAGGCAGTTCCGCGGGT...

LOC131011710
ATGGTTGGGAGCAGCATTGAGCTCGAGGCAACGATGTCCTCCAACGGATCTTTGGTTAACGGAAAGGCTTTGGATCGGATGACCGCGGCGGAAGAACTAGCCTTTGATCCGACGGAGGTGGTATCGGAGGCAGTTCCGCGGGTGGTGGAGTCGACCGGTGTAGATGGAGAGATCACGAGAGAGATCGTTTTGGGGAGAAACGTGCATACCACGTGCTTTGAGGTGACGGAGCCCGACGCCGACGACGAGTCTACCGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057795491.1
MYIYKSKTKQRTCSSSPFISAASFAHFSRFSKYLLAARVMVGSSIELEATMSSNGSLVNGKALDRMTAAEELAFDPTEVVSEAVPRVVESTGVDGEITREIVLGRNVHTTCFEVTEPDADDESTGDKDAYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDDYWGYITNCGTEGNLHGILVGREVFPDGVLYGSKESHYSVFKAARMYRMECVK...

XP_057795492.1
MVGSSIELEATMSSNGSLVNGKALDRMTAAEELAFDPTEVVSEAVPRVVESTGVDGEITREIVLGRNVHTTCFEVTEPDADDESTGDKDAYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDDYWGYITNCGTEGNLHGILVGREVFPDGVLYGSKESHYSVFKAARMYRMECVKVGTLITGEIDCTDFKAKLLQNKNKPAIINVNIGTTVKGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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