当前解析结果
SmilChr01G004760| 统一新 Gene ID | SmilChr01G004760 |
|---|---|
| 名称 | SmilChr01G004760 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65790699 - 65793386 / + |
| NCBI Gene ID | LOC131011717 |
|---|---|
| GeneID | 131011717 |
| locus_tag | - |
| NCBI Name | LOC131011717 |
| 原始查询 | LOC131011717 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.8; qcov=0.945; evalue=5.9e-58; confidence=low |
| Rice | Os07g0186500- identity=29.1; qcov=0.782; evalue=3.14e-58; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011717 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057795502.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057795502.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795502.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795502.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795502.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65790869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B127,B79,B98 |
Chr1:65790974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B127,B79,B98 |
Chr1:65791085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B102,B105,B69,C79 |
Chr1:65791283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C85 |
Chr1:65791330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:65791398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr1:65791454 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B124,C61,C78 |
Chr1:65791454 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B124,C61,C78 |
Chr1:65791519 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | B74 |
Chr1:65791519 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | B74 |
Chr1:65791542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr1:65791673 |
T |
TAA |
2bp_insertion | frameshift_variant | 1 | C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795502.1PF00931
NB-ARC 172-342 aa
PF23559
WHD_DRP 424-495 aa
PF23598
LRR_14 555-835 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795502.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 342 | 1.9e-38 | 132.4 | NB-ARC domain |
XP_057795502.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 424 | 495 | 2.5e-07 | 31.4 | Disease resistance protein Winged helix domain |
XP_057795502.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 555 | 835 | 1.3e-19 | 70.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。