Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002691

染色体: Chr02 坐标: 46619732-46624464 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002691
名称SmilChr02G002691
描述WAT1-related protein At1g43650-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向46619732 - 46624464 / +

ID 对照

NCBI Gene IDLOC131011724
GeneID131011724
locus_tag-
NCBI NameLOC131011724
原始查询LOC131011724

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述WAT1-related protein At1g43650-like
产物WAT1-related protein At1g43650-like
ArabidopsisAT1G43650 (UMAMIT22)
nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949]
identity=41.9; qcov=0.913; evalue=1.2e-82; confidence=medium
RiceOs05g0106200 (OsUMAMIT8)
-
identity=35.2; qcov=0.949; evalue=7.95e-56; confidence=medium
GOGO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG-
PfamPF00892 (EamA)
InterPro-
eggNOG-
NRGeneID:131011724

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057795507.1
2 Vacuole 液泡 0.40000 XP_057795508.1
3 Vacuole membrane 液泡膜 0.20000 XP_057795507.1
4 Nucleus 细胞核 0.00000 XP_057795507.1
5 Chromosome 染色体 0.00000 XP_057795507.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:46619799 G A EMS_canonical_SNV CDS_variant 4 B135,B2,C27,C44
Chr2:46619861 GT G 1bp_deletion frameshift_variant 46 A21,A25,A5,A6,B101,B104,B110,B111,B113,B122,B129,B134,B16,B21,B25,B26,B28,B38,B39,B40,B41,B44,B50,B55,B65,B69,B7,B70,B78,B83,B95,B97,C14,C16,C19,C2,C26,C32,C42,C5,C59,C68,C70,C84,D8,D9
Chr2:46620344 G A EMS_canonical_SNV CDS_variant 2 B131,B5
Chr2:46620393 G GT 1bp_insertion frameshift_variant 1 B45
Chr2:46620393 G GT 1bp_insertion CDS_variant 1 B45
Chr2:46620397 G A EMS_canonical_SNV CDS_variant 4 B105,B139,B4,B97
Chr2:46623540 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:46623843 C T EMS_canonical_SNV CDS_variant 2 C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795507.1
395 aa
N
1
198
395
EamA
EamA
C
PF00892 EamA 43-177 aa PF00892 EamA 213-349 aa
XP_057795508.1
356 aa
N
1
178
356
EamA
C
PF00892 EamA 174-310 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795507.1 Pfam PF00892 EamA Domain 43 177 1.3e-28 100.7 EamA-like transporter family
XP_057795507.1 Pfam PF00892 EamA Domain 213 349 1.3e-28 100.7 EamA-like transporter family
XP_057795508.1 Pfam PF00892 EamA Domain 174 310 3.7e-17 63.6 EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057939524.1
TAGTGGTGAGTGGTTGGGGGGGTTCATAAAAAGCATTAGGCCACTATATAGTGGCATGTTGGAGAGGGAGAAGCTACAAAAATATTACTACAAATTTGGGTTTGTATTATCCACTATATATCCAGATAAGTCCATCCTGTATTTGAATTTGTATATTAATAATATGGAGAAAGCGAAGGTATACATTGCAGTGGTAGTGTTGCAATGCAGCTACGCAGGCATGATTCTGTTGTCAAAGGCAGCCATGTCTTCCGGGATGA...
XM_057939525.1
ATTAGGCCACTATATAGTGGCATGTTGGAGAGGGAGAAGCTACAAAAATATTACTACAAATTTGGGTTTGTATTATCCACTATATATCCAGATAAGTCCATCCTGTATTTGAATTTGTATATTAATAATATGGAGAAAGCGAAGGTATACATTGCAGTGGTAGTGTTGCAATGCAGCTACGCAGGCATGATTCTGTTGTCAAAGGCAGCCATGTCTTCCGGGATGAATCCTTCCGTCTTCGTCGCCTATCGACAGGCCTT...

CDS

2 records

下载 CDS FASTA
LOC131011724
ATGTTGGAGAGGGAGAAGCTACAAAAATATTACTACAAATTTGGGTTTGTATTATCCACTATATATCCAGATAAGTCCATCCTGTATTTGAATTTGTATATTAATAATATGGAGAAAGCGAAGGTATACATTGCAGTGGTAGTGTTGCAATGCAGCTACGCAGGCATGATTCTGTTGTCAAAGGCAGCCATGTCTTCCGGGATGAATCCTTCCGTCTTCGTCGCCTATCGACAGGCCTTCGCCTTCTTCGCCTTGCTCCC...
LOC131011724
ATGTTGGAGAGGGAGAAGCTACAAAAATATTACTACAAATTTGGGTTTGTATTATCCACTATATATCCAGATAAGTCCATCCTGTATTTGAATTTGTATATTAATAATATGGAGAAAGCGAAGGTATACATTGCAGTGGTAGTGTTGCAATGCAGCTACGCAGGCATGATTCTGTTGTCAAAGGCAGCCATGTCTTCCGGGATGAATCCTTCCGTCTTCGTCGCCTATCGACAGGCCTTCGCCTTCTTCGCCTTGCTCCC...

Protein

2 records

下载 Protein FASTA
XP_057795507.1
MLEREKLQKYYYKFGFVLSTIYPDKSILYLNLYINNMEKAKVYIAVVVLQCSYAGMILLSKAAMSSGMNPSVFVAYRQAFAFFALLPFAFFFTSKGDSPIPWTGFCKIFFVSSYGLALGFNLNLGGLKYISATFGTAILSIVPALVFIMAVCLRIEKLSISKWHGVAKVLGAILGVSGTMAFTFYKGPPLFSNHHNAHHPFDQNTHSKHQWIKGALLAIAGQLFYAMWLTMQAPLLIQYPGKFRLTILQCGFSCLSATLY...
XP_057795508.1
MLEREKLQKYYYKFGFVLSTIYPDKSILYLNLYINNMEKAKVYIAVVVLQCSYAGMILLSKAAMSSGMNPSVFVAYRQAFAFFALLPFAFFFTSKGDSPIPWTGFCKIFFVSSYGIEKLSISKWHGVAKVLGAILGVSGTMAFTFYKGPPLFSNHHNAHHPFDQNTHSKHQWIKGALLAIAGQLFYAMWLTMQAPLLIQYPGKFRLTILQCGFSCLSATLYAAAIQRHPSSWKLRWDIDLLSVAYCGVIVTGLSYWLQAW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器