Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002692`

染色体: Chr02 坐标: 46648473-46652779 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002692`
名称	SmilChr02G002692
描述	tubby-like F-box protein 8
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46648473 - 46652779 / `+`

ID 对照

NCBI Gene ID	`LOC131011726`
GeneID	`131011726`
locus_tag	`-`
NCBI Name	`LOC131011726`
原始查询	`LOC131011726`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tubby-like F-box protein 8
产物	tubby-like F-box protein 8
Arabidopsis	`AT1G76900` (TLP1) tubby like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:844025] identity=69.5; qcov=1.07; evalue=0; confidence=high
Rice	`Os12g0163400` (OsTLP4) - identity=70.1; qcov=1.05; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF01167 (Tub); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131011726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057795509.1`
2	Cytosol	细胞质基质	0.80000	`XP_057795509.1`
3	Cell membrane	细胞膜	0.40000	`XP_057795509.1`
4	Nucleus	细胞核	0.20000	`XP_057795509.1`
5	Chromosome	染色体	0.00000	`XP_057795509.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46649716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B68,C37
`Chr2:46650056`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C28
`Chr2:46650056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:46652228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:46652256`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	B36
`Chr2:46652256`	`GAC`	`G`	2bp_deletion	CDS_variant	1	B36
`Chr2:46652408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795509.1

424 aa

212

424

F-box

F-box-like

Tub

PF00646 F-box 53-96 aa PF12937 F-box-like 53-96 aa PF01167 Tub 114-419 aa

XP_057795510.1

424 aa

212

424

F-box

F-box-like

Tub

PF00646 F-box 53-96 aa PF12937 F-box-like 53-96 aa PF01167 Tub 114-419 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795509.1`	Pfam	`PF00646`	F-box	Domain	53	96	0.00024	21.6	F-box domain
`XP_057795509.1`	Pfam	`PF12937`	F-box-like	Domain	53	96	4e-06	27.2	F-box-like
`XP_057795509.1`	Pfam	`PF01167`	Tub	Domain	114	419	1.3e-107	360.0	Tub family
`XP_057795510.1`	Pfam	`PF00646`	F-box	Domain	53	96	0.00024	21.6	F-box domain
`XP_057795510.1`	Pfam	`PF12937`	F-box-like	Domain	53	96	4e-06	27.2	F-box-like
`XP_057795510.1`	Pfam	`PF01167`	Tub	Domain	114	419	1.3e-107	360.0	Tub family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939526.1
AAATAACGAATATCCATAAATGAAAATGTAAAGACAGCTAGAATAGTTAAATATTTTGGTTGTTAAAAAGCAAGGGAAAAGCAGAGCAGGGATTGCCCGTGAAGCGGATTTAAACAGGGTGTGGAGTCCGACACGCACAAGTAGTTTTCTAGAGAGAGAAAGCGGTAGTTAGAGAGAGAAACGCGCTTCGGCAGACACATGCCTCAGAACCATAACCAAAACCGCCGTCTGTTTTAATCTCAATCCACTCGCATTTTCAC...

XM_057939527.1
AGCTAGAATAGTTAAATATTTTGGTTGTTAAAAAGCAAGGGAAAAGCAGAGCAGGGATTGCCCGTGAAGCGGATTTAAACAGGGTGTGGAGTCCGACACGCACAAGTAGTTTTCTAGAGAGAGAAAGCGGTAGTTAGAGAGAGAAACGCGCTTCGGCAGACACATGCCTCAGAACCATAACCAAAACCGCCGTCTGTTTTAATCTCAATCCACTCGCATTTTCACATACAACCGCCTTCTCCATCCATGGACCAGGTACA...

CDS

2 records

下载 CDS FASTA

LOC131011726
ATGTCGTTCCGTAGCCTAGCTCGTGACTTAAGGGATAGTATTGGAAGCTTGTCCAGACGAAGTTTTGATGTGAGGCTGCACGTTCACCACCGTGGGAAGTCTCATGGTGCTGTCCATGAGTTGCACGACCAGCCTGAAGTTGTACAGACCAGTTGTTGGTCTGGTCTTCCACCTGAATTACTCCGTGATGTGATCAAGAGATTGGAAGAGAGTGAGAGTACATGGCCTGCCCGAAAGCATGTGGTGGCATGTGGAGCTGT...

Protein

2 records

下载 Protein FASTA

XP_057795509.1
MSFRSLARDLRDSIGSLSRRSFDVRLHVHHRGKSHGAVHELHDQPEVVQTSCWSGLPPELLRDVIKRLEESESTWPARKHVVACGAVCRSWREMCKEIVQCPEFCGKLTFPISLKQPGFRDGAIQCFIKRDKSKLTYQLFLCLSPALLVENGKFLLSAKRVRRTTCTEYVISMDADSISRSNSSYIGKVRSNFLGTKFIIYDTQPPHNNSNISAPGRTSRRFYSKKVSPKVPSGSYNIAQVAYELNVLGTRGPRRMHCAM...

XP_057795510.1
MSFRSLARDLRDSIGSLSRRSFDVRLHVHHRGKSHGAVHELHDQPEVVQTSCWSGLPPELLRDVIKRLEESESTWPARKHVVACGAVCRSWREMCKEIVQCPEFCGKLTFPISLKQPGFRDGAIQCFIKRDKSKLTYQLFLCLSPALLVENGKFLLSAKRVRRTTCTEYVISMDADSISRSNSSYIGKVRSNFLGTKFIIYDTQPPHNNSNISAPGRTSRRFYSKKVSPKVPSGSYNIAQVAYELNVLGTRGPRRMHCAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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