当前解析结果
SmilChr02G002702| 统一新 Gene ID | SmilChr02G002702 |
|---|---|
| 名称 | SmilChr02G002702 |
| 描述 | pathogen-related protein-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46859463 - 46862670 / - |
| NCBI Gene ID | LOC131011738 |
|---|---|
| GeneID | 131011738 |
| locus_tag | - |
| NCBI Name | LOC131011738 |
| 原始查询 | LOC131011738 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pathogen-related protein-like |
| 产物 | pathogen-related protein-like |
| Arabidopsis | AT1G78780 (AT1G78780)pathosis-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:844214] identity=45.8; qcov=1.03; evalue=8.3e-77; confidence=high |
| Rice | Os01g0248300 (OSJNBa0049B20.17)- identity=52.3; qcov=1.03; evalue=1.54e-80; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011738 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057795541.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057795541.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795541.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795541.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795541.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46859713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B84 |
Chr2:46860811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,C27 |
Chr2:46860847 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B55 |
Chr2:46860847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:46860872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,C16,C49,D5 |
Chr2:46860938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C6 |
Chr2:46860974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:46860995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C68 |
Chr2:46861308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B84,C36 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。