Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002704`

染色体: Chr02 坐标: 46882839-46887695 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002704`
名称	SmilChr02G002704
描述	WAT1-related protein At1g43650-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46882839 - 46887695 / `-`

ID 对照

NCBI Gene ID	`LOC131011740`
GeneID	`131011740`
locus_tag	`-`
NCBI Name	`LOC131011740`
原始查询	`LOC131011740`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At1g43650-like
产物	WAT1-related protein At1g43650-like
Arabidopsis	`AT1G43650` (UMAMIT22) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949] identity=36.5; qcov=1.12; evalue=1.72e-66; confidence=medium
Rice	`Os05g0106200` (OsUMAMIT8) - identity=39.9; qcov=0.803; evalue=4.98e-53; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:131011740

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057795544.1`
2	Vacuole	液泡	0.20000	`XP_057795544.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057795544.1`
4	Nucleus	细胞核	0.00000	`XP_057795544.1`
5	Chromosome	染色体	0.00000	`XP_057795544.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46883109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,A20,B79,C36,C43
`Chr2:46883941`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:46883955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C22
`Chr2:46884144`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,A7,B126
`Chr2:46884177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C82
`Chr2:46884193`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B127
`Chr2:46884193`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B127
`Chr2:46884289`	`GC`	`G`	1bp_deletion	frameshift_variant	3	C2,C32,C68
`Chr2:46884289`	`GC`	`G`	1bp_deletion	CDS_variant	3	C2,C32,C68
`Chr2:46884328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,A7,B126
`Chr2:46884343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:46884424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795544.1

359 aa

180

359

EamA

PF00892 EamA 6-121 aa PF00892 EamA 188-325 aa

XP_057795545.1

350 aa

175

350

EamA

PF00892 EamA 6-141 aa PF00892 EamA 179-316 aa

XP_057795546.1

311 aa

156

311

EamA

PF00892 EamA 140-277 aa

XP_057795547.1

290 aa

145

290

EamA

PF00892 EamA 119-256 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795544.1`	Pfam	`PF00892`	EamA	Domain	6	121	2e-22	80.7	EamA-like transporter family
`XP_057795544.1`	Pfam	`PF00892`	EamA	Domain	188	325	2e-22	80.7	EamA-like transporter family
`XP_057795545.1`	Pfam	`PF00892`	EamA	Domain	6	141	6.5e-26	91.9	EamA-like transporter family
`XP_057795545.1`	Pfam	`PF00892`	EamA	Domain	179	316	6.5e-26	91.9	EamA-like transporter family
`XP_057795546.1`	Pfam	`PF00892`	EamA	Domain	140	277	1.8e-15	58.1	EamA-like transporter family
`XP_057795547.1`	Pfam	`PF00892`	EamA	Domain	119	256	1e-16	62.2	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939562.1
ACACATTGCACAAAATGAATACTATATAAACTGCAAACAGAAAGAAAAAAAAAAAAAAGGAGAATAGTAAAAGCATGGAGAAAGAGAAGGCGTATATTGCAGTGATAGTATTGGAGTGCGGCTATGCAGGCATGATGGTGTTATCTAAGGCAGCTATGTCTGCAGGGATGAAGCCTTCTGTCTTCGTCGCCTATCGACAGGCATTCGCCTTCTTCTCTTTGCTCCCCTTCGCATTCTTCTTCTTCACCAGCAAGGGGTCT...

XM_057939561.1
TATATAAACTGCAAACAGAAAGAAAAAAAAAAAAAAGGAGAATAGTAAAAGCATGGAGAAAGAGAAGGCGTATATTGCAGTGATAGTATTGGAGTGCGGCTATGCAGGCATGATGGTGTTATCTAAGGCAGCTATGTCTGCAGGGATGAAGCCTTCTGTCTTCGTCGCCTATCGACAGGCATTCGCCTTCTTCTCTTTGCTCCCCTTCGCATTCTTCTTCTTCACCAGCAAGGGGTCTCCTCCTCTTACATGGAGTGGGT...

CDS

4 records

下载 CDS FASTA

LOC131011740
ATGGAGAAAGAGAAGGCGTATATTGCAGTGATAGTATTGGAGTGCGGCTATGCAGGCATGATGGTGTTATCTAAGGCAGCTATGTCTGCAGGGATGAAGCCTTCTGTCTTCGTCGCCTATCGACAGGCATTCGCCTTCTTCTCTTTGCTCCCCTTCGCATTCTTCTTCTTCACCAGGATTGAAAGCCTAGAGATAAGGAAGTGGCATGGAGTAGCTAAGGTATTGGGAAGCATAATTAGCGTGTCCGGAACCATGGCATT...

LOC131011740
ATGGAGAAAGAGAAGGCGTATATTGCAGTGATAGTATTGGAGTGCGGCTATGCAGGCATGATGGTGTTATCTAAGGCAGCTATGTCTGCAGGGATGAAGCCTTCTGTCTTCGTCGCCTATCGACAGGCATTCGCCTTCTTCTCTTTGCTCCCCTTCGCATTCTTCTTCTTCACCAGCAAGGGGTCTCCTCCTCTTACATGGAGTGGGTTATGCAAGATTTTCTTTGTTTCTTCATTTGGGATTGAAAGCCTAGAGATAAG...

Protein

4 records

下载 Protein FASTA

XP_057795544.1
MEKEKAYIAVIVLECGYAGMMVLSKAAMSAGMKPSVFVAYRQAFAFFSLLPFAFFFFTSKGSPPLTWSGLCKIFFVSSFGLALSFNLCIAGLEYISATFSTATFCIVPALVFIMAVCLRESIFYEKSRIESLEIRKWHGVAKVLGSIISVSGTMALTFYKGHALYHTSTSTTHHPFDDQPHSKHQWIKGALLSIAAQFLYAMWLIMQAPLLKQYPGKFRLTIIQCGFSCLSTTIYAVAMERHPSAWRLRWDINLLSVAYS...

XP_057795545.1
MEKEKAYIAVIVLECGYAGMMVLSKAAMSAGMKPSVFVAYRQAFAFFSLLPFAFFFFTSKGSPPLTWSGLCKIFFVSSFGLALSFNLCIAGLEYISATFSTATFCIVPALVFIMAVCLRIESLEIRKWHGVAKVLGSIISVSGTMALTFYKGHALYHTSTSTTHHPFDDQPHSKHQWIKGALLSIAAQFLYAMWLIMQAPLLKQYPGKFRLTIIQCGFSCLSTTIYAVAMERHPSAWRLRWDINLLSVAYSGVIVTGMSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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