Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002707`

染色体: Chr02 坐标: 46920805-46926321 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002707`
名称	SmilChr02G002707
描述	WAT1-related protein At1g43650-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46920805 - 46926321 / `-`

ID 对照

NCBI Gene ID	`LOC131011743`
GeneID	`131011743`
locus_tag	`-`
NCBI Name	`LOC131011743`
原始查询	`LOC131011743`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At1g43650-like
产物	WAT1-related protein At1g43650-like
Arabidopsis	`AT1G43650` (UMAMIT22) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949] identity=43.5; qcov=0.98; evalue=2.62e-92; confidence=medium
Rice	`Os07g0524900` - identity=40.4; qcov=0.957; evalue=3.3e-76; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:131011743

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057795553.1`
2	Vacuole	液泡	0.20000	`XP_057795552.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057795552.1`
4	Nucleus	细胞核	0.00000	`XP_057795552.1`
5	Chromosome	染色体	0.00000	`XP_057795552.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46921001`	`C`	`CGA`	2bp_insertion	frameshift_variant	2	B26,C5
`Chr2:46921001`	`C`	`CGA`	2bp_insertion	CDS_variant	2	B26,C5
`Chr2:46921027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:46921038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C34,C39
`Chr2:46921621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C34
`Chr2:46922698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr2:46922702`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	A14,A20,B79,B84,C36,C43
`Chr2:46922761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:46922767`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C28
`Chr2:46922767`	`GA`	`G`	1bp_deletion	CDS_variant	1	C28
`Chr2:46922773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C34,C39
`Chr2:46922775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B18,B99,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795552.1

383 aa

192

383

EamA

PF00892 EamA 6-140 aa PF00892 EamA 176-299 aa

XP_057795553.1

362 aa

181

362

EamA

PF00892 EamA 155-278 aa

XP_057795554.1

347 aa

174

347

EamA

PF00892 EamA 6-140 aa PF00892 EamA 176-314 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795552.1`	Pfam	`PF00892`	EamA	Domain	6	140	2.1e-24	87.0	EamA-like transporter family
`XP_057795552.1`	Pfam	`PF00892`	EamA	Domain	176	299	2.1e-24	87.0	EamA-like transporter family
`XP_057795553.1`	Pfam	`PF00892`	EamA	Domain	155	278	5e-18	66.4	EamA-like transporter family
`XP_057795554.1`	Pfam	`PF00892`	EamA	Domain	6	140	9.4e-29	101.1	EamA-like transporter family
`XP_057795554.1`	Pfam	`PF00892`	EamA	Domain	176	314	9.4e-29	101.1	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939570.1
GGCGAATAATTTAATTGCCGATCACGACCTAAGAGCAGCTAAGGCGATAATTTATTATACACAATATTTTTAATTAAATTCGGAAAATGGGGGTTTATAAATCTGCACACACTGCACAAAATGTGTAGTTGAAGATCAATACTATATAAACTGCAAAAAGAAAGAAAAAAGCAAATTAAAAGGAAAAAATAGTAAAAGCATGGAGAAAGCGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGA...

XM_057939569.1
ATAATTTAATTGCCGATCACGACCTAAGAGCAGCTAAGGCGATAATTTATTATACACAATATTTTTAATTAAATTCGGAAAATGGGGGTTTATAAATCTGCACACACTGCACAAAATGTGTAGTTGAAGATCAATACTATATAAACTGCAAAAAGAAAGAAAAAAGCAAATTAAAAGGAAAAAATAGTAAAAGCATGGAGAAAGCGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGATGGTG...

CDS

3 records

下载 CDS FASTA

LOC131011743
ATGGAGAAAGCGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGATGGTGTTGTCAAAGGCAGCTATGTCTGCGGGGATGAAGCCTTCCATCTTCGTCGCCTACCGACAGGGATTCGCCTTCTTCTCCTTGCTCCCCTTCGCCTTCTTCTTCACCAGATTGGCGTTGAGTTTCAATCTGAATTTAGCAGGATTGGAGTATATTTCGGCAACATTTGGTACAGCCATTCTCAGCTTTGTTCCTGC...

LOC131011743
ATGGAGAAAGCGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGATGGTGTTGTCAAAGGCAGCTATGTCTGCGGGGATGAAGCCTTCCATCTTCGTCGCCTACCGACAGGGATTCGCCTTCTTCTCCTTGCTCCCCTTCGCCTTCTTCTTCACCAGCAAGGGGTCACCTCCTCTTACATGGAGTGGGTTATGCAAGATTTTCTTTGTTTCTTCATATGGATTGGCGTTGAGTTTCAATCTGAA...

Protein

3 records

下载 Protein FASTA

XP_057795552.1
MEKAKAYIAVVVIQCSFAGMMVLSKAAMSAGMKPSIFVAYRQGFAFFSLLPFAFFFTSKGSPPLTWSGLCKIFFVSSYGLALSFNLNLAGLEYISATFGTAILSFVPALVFIMAVCLRIESLDIRKWHGVTKVLGSIISLSGAMAFTFYKGHALYHTSTSHHPLEDKPHSKHQWIMGAFLAIVATLFYAMWITMQAPLLKQYPGKFRLTIMQCGFSSLSATLYAAVVERHSSAWKLGWDIHLLSVAYCGVIVGGMGYWLQ...

XP_057795553.1
MEKAKAYIAVVVIQCSFAGMMVLSKAAMSAGMKPSIFVAYRQGFAFFSLLPFAFFFTRLALSFNLNLAGLEYISATFGTAILSFVPALVFIMAVCLRIESLDIRKWHGVTKVLGSIISLSGAMAFTFYKGHALYHTSTSHHPLEDKPHSKHQWIMGAFLAIVATLFYAMWITMQAPLLKQYPGKFRLTIMQCGFSSLSATLYAAVVERHSSAWKLGWDIHLLSVAYCGVIVGGMGYWLQAWVIEKKGPVFTAIFNPLALV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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