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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002763

染色体: Chr02 坐标: 47693642-47697452 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002763
名称SmilChr02G002763
描述putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向47693642 - 47697452 / -

ID 对照

NCBI Gene IDLOC131011793
GeneID131011793
locus_tag-
NCBI NameLOC131011793
原始查询LOC131011793

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g77010%2C mitochondrial
ArabidopsisAT1G77010 (AT1G77010)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844037]
identity=51.7; qcov=0.98; evalue=0; confidence=high
RiceOs03g0849700
-
identity=45.6; qcov=0.962; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131011793

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057795618.1
2 Nucleus 细胞核 0.00000 XP_057795618.1
3 Chromosome 染色体 0.00000 XP_057795618.1
4 Centromere 着丝粒 0.00000 XP_057795618.1
5 Chromatin 染色质 0.00000 XP_057795618.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:47695673 G A EMS_canonical_SNV CDS_variant 2 A5,D9
Chr2:47695727 G A EMS_canonical_SNV CDS_variant 2 A5,D9
Chr2:47695841 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:47695856 G A EMS_canonical_SNV CDS_variant 3 A5,C22,D9
Chr2:47696008 C T EMS_canonical_SNV CDS_variant 2 B21,B51
Chr2:47696066 G A EMS_canonical_SNV CDS_variant 2 A5,D9
Chr2:47696104 C T EMS_canonical_SNV CDS_variant 5 B109,B123,B130,B132,B139
Chr2:47696162 G A EMS_canonical_SNV CDS_variant 4 B121,B24,B49,C80
Chr2:47696222 G A EMS_canonical_SNV CDS_variant 2 B95,C14
Chr2:47696224 C T EMS_canonical_SNV CDS_variant 2 A5,D9
Chr2:47696291 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:47696315 C T EMS_canonical_SNV CDS_variant 2 A5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795618.1
691 aa
N
1
346
691
PPR
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR
PPR
E_motif
C
PF01535 PPR 46-73 aa PF01535 PPR 74-103 aa PF01535 PPR 105-134 aa PF01535 PPR 137-163 aa PF01535 PPR 245-267 aa PF13041 PPR_2 272-320 aa PF01535 PPR 276-305 aa PF01535 PPR 348-371 aa PF01535 PPR 378-403 aa PF01535 PPR 407-432 aa PF01535 PPR 479-505 aa PF13041 PPR_2 506-552 aa PF13812 PPR_3 508-552 aa PF01535 PPR 509-538 aa PF13812 PPR_3 528-588 aa PF01535 PPR 543-570 aa PF01535 PPR 580-604 aa PF20431 E_motif 630-684 aa
XP_057795619.1
691 aa
N
1
346
691
PPR
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR
PPR
E_motif
C
PF01535 PPR 46-73 aa PF01535 PPR 74-103 aa PF01535 PPR 105-134 aa PF01535 PPR 137-163 aa PF01535 PPR 245-267 aa PF13041 PPR_2 272-320 aa PF01535 PPR 276-305 aa PF01535 PPR 348-371 aa PF01535 PPR 378-403 aa PF01535 PPR 407-432 aa PF01535 PPR 479-505 aa PF13041 PPR_2 506-552 aa PF13812 PPR_3 508-552 aa PF01535 PPR 509-538 aa PF13812 PPR_3 528-588 aa PF01535 PPR 543-570 aa PF01535 PPR 580-604 aa PF20431 E_motif 630-684 aa
XP_057795620.1
691 aa
N
1
346
691
PPR
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR
PPR
E_motif
C
PF01535 PPR 46-73 aa PF01535 PPR 74-103 aa PF01535 PPR 105-134 aa PF01535 PPR 137-163 aa PF01535 PPR 245-267 aa PF13041 PPR_2 272-320 aa PF01535 PPR 276-305 aa PF01535 PPR 348-371 aa PF01535 PPR 378-403 aa PF01535 PPR 407-432 aa PF01535 PPR 479-505 aa PF13041 PPR_2 506-552 aa PF13812 PPR_3 508-552 aa PF01535 PPR 509-538 aa PF13812 PPR_3 528-588 aa PF01535 PPR 543-570 aa PF01535 PPR 580-604 aa PF20431 E_motif 630-684 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795618.1 Pfam PF01535 PPR Repeat 46 73 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 74 103 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 105 134 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 137 163 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 245 267 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF13041 PPR_2 Repeat 272 320 1.9e-82 271.9 PPR repeat family
XP_057795618.1 Pfam PF01535 PPR Repeat 276 305 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 348 371 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 378 403 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 407 432 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 479 505 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF13041 PPR_2 Repeat 506 552 1.9e-82 271.9 PPR repeat family
XP_057795618.1 Pfam PF13812 PPR_3 Repeat 508 552 4.1e-24 85.2 Pentatricopeptide repeat domain
XP_057795618.1 Pfam PF01535 PPR Repeat 509 538 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF13812 PPR_3 Repeat 528 588 4.1e-24 85.2 Pentatricopeptide repeat domain
XP_057795618.1 Pfam PF01535 PPR Repeat 543 570 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF01535 PPR Repeat 580 604 8.7e-93 299.1 PPR repeat
XP_057795618.1 Pfam PF20431 E_motif Repeat 630 684 4.6e-12 46.7 E motif
XP_057795619.1 Pfam PF01535 PPR Repeat 46 73 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 74 103 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 105 134 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 137 163 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 245 267 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF13041 PPR_2 Repeat 272 320 1.9e-82 271.9 PPR repeat family
XP_057795619.1 Pfam PF01535 PPR Repeat 276 305 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 348 371 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 378 403 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 407 432 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 479 505 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF13041 PPR_2 Repeat 506 552 1.9e-82 271.9 PPR repeat family
XP_057795619.1 Pfam PF13812 PPR_3 Repeat 508 552 4.1e-24 85.2 Pentatricopeptide repeat domain
XP_057795619.1 Pfam PF01535 PPR Repeat 509 538 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF13812 PPR_3 Repeat 528 588 4.1e-24 85.2 Pentatricopeptide repeat domain
XP_057795619.1 Pfam PF01535 PPR Repeat 543 570 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF01535 PPR Repeat 580 604 8.7e-93 299.1 PPR repeat
XP_057795619.1 Pfam PF20431 E_motif Repeat 630 684 4.6e-12 46.7 E motif
XP_057795620.1 Pfam PF01535 PPR Repeat 46 73 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 74 103 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 105 134 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 137 163 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 245 267 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF13041 PPR_2 Repeat 272 320 1.9e-82 271.9 PPR repeat family
XP_057795620.1 Pfam PF01535 PPR Repeat 276 305 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 348 371 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 378 403 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 407 432 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 479 505 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF13041 PPR_2 Repeat 506 552 1.9e-82 271.9 PPR repeat family
XP_057795620.1 Pfam PF13812 PPR_3 Repeat 508 552 4.1e-24 85.2 Pentatricopeptide repeat domain
XP_057795620.1 Pfam PF01535 PPR Repeat 509 538 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF13812 PPR_3 Repeat 528 588 4.1e-24 85.2 Pentatricopeptide repeat domain
XP_057795620.1 Pfam PF01535 PPR Repeat 543 570 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF01535 PPR Repeat 580 604 8.7e-93 299.1 PPR repeat
XP_057795620.1 Pfam PF20431 E_motif Repeat 630 684 4.6e-12 46.7 E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057939635.1
CTAAATCAATGCTAAAAGCGACCATTAAGGAATGGACTTCCAACACTTGCAAAGCTACGCACGTTTACTCAATTCCTTAAACTCCCCAAACTGCGTCAGACAAGGGAAGCAACTCCACCTTCTTTTCCTCAAAAATGGCGTCCTGTTTTCCACTCTCAGCATCGCCAACCGCCTCCTTCAAATGTACGCTAGGTGCGGGAGAATGGACGACGCCCGGAACCTGTTCGAGGAAATGCCGCAAAGGAATTGTTTCACTTGGA...
XM_057939637.1
CTAAATCAATGCTAAAAGCGACCATTAAGGAATGGACTTCCAACACTTGCAAAGCTACGCACGTTTACTCAATTCCTTAAACTCCCCAAACTGCGTCAGACAAGGGAAGCAACTCCACCTTCTTTTCCTCAAAAATGGCGTCCTGTTTTCCACTCTCAGCATCGCCAACCGCCTCCTTCAAATGTACGCTAGGTGCGGGAGAATGGACGACGCCCGGAACCTGTTCGAGGAAATGCCGCAAAGGAATTGTTTCACTTGGA...

CDS

3 records

下载 CDS FASTA
LOC131011793
ATGGACTTCCAACACTTGCAAAGCTACGCACGTTTACTCAATTCCTTAAACTCCCCAAACTGCGTCAGACAAGGGAAGCAACTCCACCTTCTTTTCCTCAAAAATGGCGTCCTGTTTTCCACTCTCAGCATCGCCAACCGCCTCCTTCAAATGTACGCTAGGTGCGGGAGAATGGACGACGCCCGGAACCTGTTCGAGGAAATGCCGCAAAGGAATTGTTTCACTTGGAACACTCTTCTCGAAGGGTATGCTAAGTCAGG...
LOC131011793
ATGGACTTCCAACACTTGCAAAGCTACGCACGTTTACTCAATTCCTTAAACTCCCCAAACTGCGTCAGACAAGGGAAGCAACTCCACCTTCTTTTCCTCAAAAATGGCGTCCTGTTTTCCACTCTCAGCATCGCCAACCGCCTCCTTCAAATGTACGCTAGGTGCGGGAGAATGGACGACGCCCGGAACCTGTTCGAGGAAATGCCGCAAAGGAATTGTTTCACTTGGAACACTCTTCTCGAAGGGTATGCTAAGTCAGG...

Protein

3 records

下载 Protein FASTA
XP_057795618.1
MDFQHLQSYARLLNSLNSPNCVRQGKQLHLLFLKNGVLFSTLSIANRLLQMYARCGRMDDARNLFEEMPQRNCFTWNTLLEGYAKSGHKTHMLDLFHSMPQKNDFSWNAILSGLARAGELDAARRLLNEMPRKNGIAWSTMIHGCVRNGRPGMALVLFKEFLKWEAVESGGVLRWDPVVLATVVGACLEFGSLDLGKQVHARMVVDGVEFDAVLGSSLVNMYGKCCDLDSADRLLNAMDDADDYSLSSLISCYANCGRME...
XP_057795619.1
MDFQHLQSYARLLNSLNSPNCVRQGKQLHLLFLKNGVLFSTLSIANRLLQMYARCGRMDDARNLFEEMPQRNCFTWNTLLEGYAKSGHKTHMLDLFHSMPQKNDFSWNAILSGLARAGELDAARRLLNEMPRKNGIAWSTMIHGCVRNGRPGMALVLFKEFLKWEAVESGGVLRWDPVVLATVVGACLEFGSLDLGKQVHARMVVDGVEFDAVLGSSLVNMYGKCCDLDSADRLLNAMDDADDYSLSSLISCYANCGRME...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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