当前解析结果
SmilChr02G002767| 统一新 Gene ID | SmilChr02G002767 |
|---|---|
| 名称 | SmilChr02G002767 |
| 描述 | uncharacterized SmilChr02G002767 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47728575 - 47730018 / + |
| NCBI Gene ID | LOC131011795 |
|---|---|
| GeneID | 131011795 |
| locus_tag | - |
| NCBI Name | LOC131011795 |
| 原始查询 | LOC131011795 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | embryo defective 2170 [Source:NCBI gene (formerly Entrezgene);Acc:838738]; symbol=emb2170; hit=AT1G21390; species=arabidopsis; confidence=medium |
| 产物 | embryo defective 2170 [Source:NCBI gene (formerly Entrezgene);Acc:838738]; symbol=emb2170; hit=AT1G21390; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G21390 (emb2170)embryo defective 2170 [Source:NCBI gene (formerly Entrezgene);Acc:838738] identity=40.2; qcov=0.713; evalue=1e-20; confidence=medium |
| Rice | Os11g0199801- identity=47; qcov=0.27; evalue=7.7e-09; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011795 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795622.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057795622.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795622.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795622.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795622.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47728770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:47728803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr2:47728839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:47728856 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C24,C3,C73 |
Chr2:47728968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B140,B72,D3 |
Chr2:47729061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:47729187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:47729343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B32,B6,C63 |
Chr2:47729346 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | A11,B71,B78,C62 |
Chr2:47729346 |
CA |
C |
1bp_deletion | CDS_variant | 4 | A11,B71,B78,C62 |
Chr2:47729371 |
A |
AG |
1bp_insertion | frameshift_variant | 165 | A10,A15,A16,A18,A19,A22,A23,A24,A25,A3,A5,A8,A9,B10,B101,B102,B103,B104,B105,B106,B108,B110,B111,B112,B113,B114,B115,B119,B122,B123,B125,B126,B127,B128,B13,B131,B133,B134,B137,B138,B15,B16,B17,B19,B21,B23,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B36,B38,B39,B4,B42,B43,B44,B47,B48,B51,B53,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B73,B74,B76,B8,B84,B85,B87,B88,B89,B9,B90,B92,B93,B94,B95,B97,C1,C11,C12,C13,C14,C15,C17,C19,C2,C20,C21,C22,C23,C24,C26,C28,C29,C3,C31,C32,C33,C37,C38,C39,C41,C45,C46,C47,C48,C5,C50,C51,C52,C53,C56,C57,C58,C59,C6,C63,C64,C65,C66,C67,C68,C69,C7,C72,C73,C74,C77,C78,C79,C8,C80,C81,C83,C84,C87,C9,D10,D11,D2,D6,D7 |
Chr2:47729372 |
C |
CGG |
2bp_insertion | frameshift_variant | 168 | A10,A15,A16,A18,A19,A22,A23,A24,A25,A3,A5,A8,A9,B10,B101,B102,B103,B104,B105,B106,B108,B110,B111,B112,B113,B114,B115,B119,B122,B123,B125,B126,B127,B128,B13,B131,B133,B134,B137,B138,B140,B15,B16,B17,B19,B21,B23,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B36,B38,B39,B4,B42,B43,B44,B47,B48,B51,B53,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B76,B8,B84,B85,B87,B88,B89,B9,B90,B92,B93,B94,B95,B97,C1,C11,C12,C13,C14,C15,C17,C19,C2,C20,C21,C22,C23,C24,C26,C28,C29,C3,C31,C32,C33,C37,C38,C39,C41,C45,C46,C47,C48,C5,C50,C51,C52,C53,C56,C57,C58,C59,C6,C63,C64,C65,C66,C67,C68,C69,C7,C72,C73,C74,C77,C78,C79,C8,C80,C81,C83,C84,C87,C9,D10,D11,D2,D3,D6,D7 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。