Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002774

染色体: Chr02 坐标: 47811022-47814544 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002774
名称SmilChr02G002774
描述uncharacterized SmilChr02G002774
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向47811022 - 47814544 / +

ID 对照

NCBI Gene IDLOC131011802
GeneID131011802
locus_tag-
NCBI NameLOC131011802
原始查询LOC131011802

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述microfibrillar-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831658]; symbol=AT5G17900; hit=AT5G17900; species=arabidopsis; confidence=high
产物microfibrillar-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831658]; symbol=AT5G17900; hit=AT5G17900; species=arabidopsis; confidence=high
ArabidopsisAT5G17900 (AT5G17900)
microfibrillar-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831658]
identity=72.7; qcov=1; evalue=0; confidence=high
RiceOs02g0280100
-
identity=70.8; qcov=1; evalue=3.04e-174; confidence=high
GOGO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0005684 (U2-type spliceosomal complex)
KEGG-
PfamPF06991 (MFAP1)
InterPro-
eggNOG-
NRGeneID:131011802

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057795630.1
2 Cytoplasm 细胞质 0.20000 XP_057795630.1
3 Chromosome 染色体 0.00000 XP_057795630.1
4 Centromere 着丝粒 0.00000 XP_057795630.1
5 Chromatin 染色质 0.00000 XP_057795630.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:47811394 G A EMS_canonical_SNV CDS_variant 1 C10
Chr2:47811439 C T EMS_canonical_SNV CDS_variant 1 B98
Chr2:47811649 G A EMS_canonical_SNV CDS_variant 3 B131,B64,C33
Chr2:47812078 G A EMS_canonical_SNV CDS_variant 2 A24,C78
Chr2:47812321 C T EMS_canonical_SNV CDS_variant 2 B93,C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795630.1
434 aa
N
1
217
434
MFAP1
C
PF06991 MFAP1 170-391 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795630.1 Pfam PF06991 MFAP1 Family 170 391 3.2e-76 256.7 Microfibril-associated/Pre-mRNA processing

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057939647.1
ATTGTTACTGGTTTCACACACAAACTAGGGATTTAAAAGAGTTCACCGATTCTCCGCCGTGTCCGTCCTTGGACAGACTTGCCCATGTCTCTTTATTTTCTTCAATTCTGCAACTTTGAAGAAATTTAGTTTTTTTCCTCTGGTTCGACTTTTTCTCTAGGTTTTTTCCAGTTTTGAGGGGAGCTTTTCGCTATCTTCTCCTAATTTTTTCTGCTATTGGTGTGTTGAGCAAGGAGCTTCTGTAAAATCCGTAGCCATGT...

CDS

1 records

下载 CDS FASTA
LOC131011802
ATGTCGGTGACGGCGGGGGTTAGCGATACAGTGATTGCGGTTAGGGATAAGCTTAGGGGTAAAATCGGGCAGACGAAAGTTAAAAGGTATTGGCCGGGAAAAGCTCCGGAGTGGGCGGACGACTACGATGAAGGCGACGATATCCGGATGACGCGGGCGGCCGCCCTCGAGAAAGCTTTCCCCATCAATGAGGGTTCCCACGTTACGCGGAAGGATGATCCTAGGTTGCGCCGTTTGGCCCAGAGTAGGATTGATAATCG...

Protein

1 records

下载 Protein FASTA
XP_057795630.1
MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKAPEWADDYDEGDDIRMTRAAALEKAFPINEGSHVTRKDDPRLRRLAQSRIDNRDEVREDHRRIRQAEIVSTVEEESRRLEGMDVEEEDDEALEERRRKIREKLLQRQQEEAALLPEEEEEEEGEEEEEEESEYETDSEEETTGIAMVKPVFVPKSERDTIAERERLEEEERALEEEAKRRIEERKRETKEIVVEKIKEDLEIQKNIELDANIADVDTDDDVNEAEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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