Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002773`

染色体: Chr02 坐标: 47805453-47823024 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002773`
名称	SmilChr02G002773
描述	uncharacterized SmilChr02G002773
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	47805453 - 47823024 / `+`

ID 对照

NCBI Gene ID	`LOC131011803`
GeneID	`131011803`
locus_tag	`-`
NCBI Name	`LOC131011803`
原始查询	`LOC131011803`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WD repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:838113]; symbol=AT1G15420; hit=AT1G15420; species=arabidopsis; confidence=high
产物	WD repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:838113]; symbol=AT1G15420; hit=AT1G15420; species=arabidopsis; confidence=high
Arabidopsis	`AT1G15420` (AT1G15420) WD repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:838113] identity=57.2; qcov=0.651; evalue=1.14e-58; confidence=high
Rice	`Os12g0634800` - identity=50.5; qcov=0.871; evalue=4.97e-56; confidence=high
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005730 (nucleolus)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF04003 (Utp12)
InterPro	-
eggNOG	-
NR	GeneID:131011803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795631.1`
2	Cytoplasm	细胞质	0.40000	`XP_057795631.1`
3	Chromosome	染色体	0.00000	`XP_057795631.1`
4	Centromere	着丝粒	0.00000	`XP_057795631.1`
5	Chromatin	染色质	0.00000	`XP_057795631.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:47820423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:47821268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C78
`Chr2:47821632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B60,D7
`Chr2:47821668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B49
`Chr2:47822263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C78
`Chr2:47822269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B135,B54,C44
`Chr2:47822338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:47822532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:47822658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B58,B93,C2
`Chr2:47822669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,D8
`Chr2:47822808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795631.1

255 aa

128

255

Utp12

PF04003 Utp12 88-189 aa

XP_057795632.1

255 aa

128

255

Utp12

PF04003 Utp12 88-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795631.1`	Pfam	`PF04003`	Utp12	Family	88	189	3.7e-16	59.9	Dip2/Utp12 Family
`XP_057795632.1`	Pfam	`PF04003`	Utp12	Family	88	189	3.7e-16	59.9	Dip2/Utp12 Family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939649.1
AAGAAGCCCATAAACCCAAGTATATTAAAATTAGGGAAAAGCCCAAAGCATATCTAGGGCTAATTGAGAAATCTTCTTGACCTAGAAATCAATCATCTAATTCTCTCAACCGATTCTGCCATCACTATTTTCGCTTCTCCTCAGATATATAATATTGGAGTATTTCTCTATTTCTTGAGATTCTGAAGCAAAGCTTACCATAAATCATGGGAAAGAAGGGAAAAATCGAGAGAAATCATGGGAAAGTAGCCAGTGAGGTC...

XM_057939648.1
AAAAGAAAAAAAGAGAGAAAAATCGTAGTCAGTGACAAACAATATTTACGGCTAAAAATCGTACCATATTCATATAAATTGTAGAGAAAGTGATAAATACACAACAATTATGAAAATGAAATATCCCCGCAAAGATATTGATCAGATTTTAGGTAAAAAAAAAAATAGTGAAATGAATTGCAAATTCACAAAGGACACACTCGTCTTTTGAAAATATGTATGAGGATAAATTGGTAATTTTCTTATTTTTATCCTATTTG...

CDS

2 records

下载 CDS FASTA

LOC131011803
ATGGGAAAGAAGGGAAAAATCGAGAGAAATCATGGGAAAGTAGCCAGTGAGGTCTTGTTTCAGAAGAGTATTGGAGATAAAGATGGATTTGATGTTGTGGATGACTTGAGTGAACCAACCATGGGTGAAAAACTTGCAAGCCTCAACTTGGAAGGAAATGACAATGCCCCTAACCCTGAAAATGCAGACTCTTCTCTTCTGGCAAAGCCACCTAGTGCAGACTCGGTTAATATCTTAGTTAAGCAAGCACTGCATGCTGA...

Protein

2 records

下载 Protein FASTA

XP_057795631.1
MGKKGKIERNHGKVASEVLFQKSIGDKDGFDVVDDLSEPTMGEKLASLNLEGNDNAPNPENADSSLLAKPPSADSVNILVKQALHADDRALLIDCLYRQDEKVIANSLSLLNPSDVLKFLKSLVPIIQLRGAVLACALPWLKSLLLQHSSSIMSQESSLAVLNSLFQIIESRVSTFNPALQLSCCLDLLYADSVDDGVEENDIIAPVIYEDEDEDESDDDASEDSSMEVDTVEDGEEPIIYSDISDDEEDGEIND

XP_057795632.1
MGKKGKIERNHGKVASEVLFQKSIGDKDGFDVVDDLSEPTMGEKLASLNLEGNDNAPNPENADSSLLAKPPSADSVNILVKQALHADDRALLIDCLYRQDEKVIANSLSLLNPSDVLKFLKSLVPIIQLRGAVLACALPWLKSLLLQHSSSIMSQESSLAVLNSLFQIIESRVSTFNPALQLSCCLDLLYADSVDDGVEENDIIAPVIYEDEDEDESDDDASEDSSMEVDTVEDGEEPIIYSDISDDEEDGEIND

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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