Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002781`

染色体: Chr02 坐标: 47903488-47904271 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002781`
名称	SmilChr02G002781
描述	probable calcium-binding protein CML44
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	47903488 - 47904271 / `+`

ID 对照

NCBI Gene ID	`LOC131011811`
GeneID	`131011811`
locus_tag	`-`
NCBI Name	`LOC131011811`
原始查询	`LOC131011811`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML44
产物	probable calcium-binding protein CML44
Arabidopsis	`AT1G21550` (AT1G21550) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838756] identity=42.7; qcov=1.01; evalue=1.15e-29; confidence=medium
Rice	`Os04g0492800` (OsCML22) - identity=36.8; qcov=1.03; evalue=5.04e-22; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131011811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057795642.1`
2	Cytosol	细胞质基质	0.40000	`XP_057795642.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057795642.1`
4	Nucleus	细胞核	0.00000	`XP_057795642.1`
5	Chromosome	染色体	0.00000	`XP_057795642.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:47903808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr2:47903845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,C18
`Chr2:47903881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C51
`Chr2:47903921`	`ATG`	`A`	2bp_deletion	frameshift_variant	1	A23
`Chr2:47903921`	`ATG`	`A`	2bp_deletion	CDS_variant	1	A23
`Chr2:47903955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr2:47903988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C70,C72,D1
`Chr2:47904032`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B64,C33
`Chr2:47904037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C18
`Chr2:47904039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B130,B29,B63,C74,D1
`Chr2:47904058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C70,C72
`Chr2:47904093`	`C`	`CT`	1bp_insertion	frameshift_variant	76	A14,A20,A3,A8,A9,B10,B106,B107,B108,B109,B111,B112,B119,B12,B121,B122,B124,B127,B129,B130,B132,B133,B15,B16,B18,B20,B22,B23,B25,B26,B27,B29,B3,B42,B43,B44,B50,B52,B57,B63,B64,B71,B76,B81,B88,B89,B9,B98,C1,C16,C17,C18,C19,C26,C28,C3,C31,C35,C4,C51,C55,C61,C63,C70,C71,C72,C74,C77,C79,C83,C87,D1,D2,D5,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795642.1

148 aa

148

EF-hand_5

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 12-32 aa PF13499 EF-hand_7 74-139 aa PF00036 EF-hand_1 76-102 aa PF13405 EF-hand_6 76-104 aa PF13202 EF-hand_5 77-99 aa PF13833 EF-hand_8 80-102 aa PF13833 EF-hand_8 107-138 aa PF00036 EF-hand_1 113-139 aa PF13202 EF-hand_5 118-138 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795642.1`	Pfam	`PF13202`	EF-hand_5	Domain	12	32	3.3e-15	55.5	EF hand
`XP_057795642.1`	Pfam	`PF13499`	EF-hand_7	Domain	74	139	7.8e-20	71.7	EF-hand domain pair
`XP_057795642.1`	Pfam	`PF00036`	EF-hand_1	Domain	76	102	5.5e-23	79.5	EF hand domain
`XP_057795642.1`	Pfam	`PF13405`	EF-hand_6	Domain	76	104	4.1e-20	70.2	EF-hand domain
`XP_057795642.1`	Pfam	`PF13202`	EF-hand_5	Domain	77	99	3.3e-15	55.5	EF hand
`XP_057795642.1`	Pfam	`PF13833`	EF-hand_8	Domain	80	102	6.3e-11	42.6	EF-hand domain pair
`XP_057795642.1`	Pfam	`PF13833`	EF-hand_8	Domain	107	138	6.3e-11	42.6	EF-hand domain pair
`XP_057795642.1`	Pfam	`PF00036`	EF-hand_1	Domain	113	139	5.5e-23	79.5	EF hand domain
`XP_057795642.1`	Pfam	`PF13202`	EF-hand_5	Domain	118	138	3.3e-15	55.5	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939659.1
TAAATTTTCCAACACATTTCACGCCGCGCGGGGTGATGACTTGATTATTCGAAAAACCAAAAAGTAGAATGAATAAAGGAATTTGTTGTTGGATTTTTCCCAAATATTGAATCCAATATTAGTGCTCTCCACATATACATATTTCCTGAAAATTCTGATTTTCAACGCCGGCCCCCTCCCCTACCCTTTATATAAACTAAACCATCAATCCAGCAATAGATTTCAAATCTCGACATGTCTCCGATCAGCGCAGACGATCT...

CDS

1 records

下载 CDS FASTA

LOC131011811
ATGTCTCCGATCAGCGCAGACGATCTGCACAGAATCTTCAAAAAGTTGGACAAGAAAAACAAGGGCGTAGTCGGCATTGAGGAGCTGCAGCACCTCCTGGAGCAAATCGGGATCCAGACGAGGGCGGAGGAGCTGGAGAAGCTGGTGGGGGCCACCGCCGGCCTCAACTATTTGGACTTCTTCTTCTTCTACGAGGCCAATGTGAAAGCGGAGCATGACGATGATCTACTCAAGGCCTTCGAGGTCTTCGACTTGAACGG...

Protein

1 records

下载 Protein FASTA

XP_057795642.1
MSPISADDLHRIFKKLDKKNKGVVGIEELQHLLEQIGIQTRAEELEKLVGATAGLNYLDFFFFYEANVKAEHDDDLLKAFEVFDLNGDGRISCDELHSVLSRLGLLEKRSADDCKEMISVYDANSDGVLDFHEFKDMMSAPTSHQQHT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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