当前解析结果
SmilChr02G002789| 统一新 Gene ID | SmilChr02G002789 |
|---|---|
| 名称 | SmilChr02G002789 |
| 描述 | uncharacterized SmilChr02G002789 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47946256 - 47954169 / - |
| NCBI Gene ID | LOC131011817 |
|---|---|
| GeneID | 131011817 |
| locus_tag | - |
| NCBI Name | LOC131011817 |
| 原始查询 | LOC131011817 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:838759]; symbol=AT1G21580; hit=AT1G21580; species=arabidopsis; confidence=low |
| 产物 | Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:838759]; symbol=AT1G21580; hit=AT1G21580; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G21580 (AT1G21580)Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:838759] identity=47.6; qcov=0.374; evalue=1.21e-169; confidence=low |
| Rice | Os06g0638000- identity=37; qcov=0.378; evalue=8.08e-105; confidence=low |
| GO | GO:0005634 (nucleus); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF28644 (C3H7_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011817 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795648.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057795648.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057795648.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057795648.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057795648.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47946494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:47946789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:47947323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C43,D9 |
Chr2:47947470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C78 |
Chr2:47947760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:47948945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:47949817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:47949818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:47950001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:47950027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B55,C24,C3,C73 |
Chr2:47950028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B9 |
Chr2:47950272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B118,B83,C82,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795648.1PF28644
C3H7_N 1576-1673 aa
XP_057795650.1PF28644
C3H7_N 1576-1672 aa
XP_057795651.1PF28644
C3H7_N 1565-1662 aa
XP_057795652.1PF28644
C3H7_N 1565-1661 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795648.1 |
Pfam | PF28644 |
C3H7_N | Domain | 1576 | 1673 | 5e-47 | 159.3 | CCCH zinc finger protein N-terminal domain |
XP_057795650.1 |
Pfam | PF28644 |
C3H7_N | Domain | 1576 | 1672 | 2.6e-48 | 163.4 | CCCH zinc finger protein N-terminal domain |
XP_057795651.1 |
Pfam | PF28644 |
C3H7_N | Domain | 1565 | 1662 | 4.9e-47 | 159.3 | CCCH zinc finger protein N-terminal domain |
XP_057795652.1 |
Pfam | PF28644 |
C3H7_N | Domain | 1565 | 1661 | 2.6e-48 | 163.4 | CCCH zinc finger protein N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。