当前解析结果
SmilChr02G002787| 统一新 Gene ID | SmilChr02G002787 |
|---|---|
| 名称 | SmilChr02G002787 |
| 描述 | uncharacterized SmilChr02G002787 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47940967 - 47944805 / + |
| NCBI Gene ID | LOC131011818 |
|---|---|
| GeneID | 131011818 |
| locus_tag | - |
| NCBI Name | LOC131011818 |
| 原始查询 | LOC131011818 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838757]; symbol=AT1G21560; hit=AT1G21560; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838757]; symbol=AT1G21560; hit=AT1G21560; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G21560 (AT1G21560)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838757] identity=30.9; qcov=0.485; evalue=2.5e-12; confidence=low |
| Rice | Os05g0423200- identity=32.3; qcov=0.343; evalue=1.84e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011818 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795653.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057795653.1 |
| 3 | Nucleoplasm | 核质 | 0.80000 | XP_057795653.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795653.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795653.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47942355 |
G |
GCA |
2bp_insertion | frameshift_variant | 5 | A20,B39,B65,C4,C80 |
Chr2:47942355 |
G |
GCA |
2bp_insertion | CDS_variant | 5 | A20,B39,B65,C4,C80 |
Chr2:47942394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B69,C86 |
Chr2:47942396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:47942470 |
T |
TC |
1bp_insertion | frameshift_variant | 8 | A18,B110,B124,B16,B6,B8,B88,C67 |
Chr2:47942572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:47942576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,C43,D9 |
Chr2:47942633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:47942742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,D11 |
Chr2:47943064 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | A18,B110,B124,B16,B6,B88,C22,C67 |
Chr2:47943066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr2:47943461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B8,C22 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
12 records
下载 cDNA FASTA12 records
下载 CDS FASTA12 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。