Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002795`

染色体: Chr02 坐标: 48037233-48039898 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002795`
名称	SmilChr02G002795
描述	glutathione S-transferase TCHQD
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48037233 - 48039898 / `+`

ID 对照

NCBI Gene ID	`LOC131011827`
GeneID	`131011827`
locus_tag	`-`
NCBI Name	`LOC131011827`
原始查询	`LOC131011827`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutathione S-transferase TCHQD
产物	glutathione S-transferase TCHQD
Arabidopsis	`AT1G77290` (AT1G77290) Glutathione S-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844065] identity=67.4; qcov=1; evalue=1.48e-137; confidence=high
Rice	`Os04g0435500` (OsTCHQD1) - identity=57.7; qcov=1; evalue=2.74e-118; confidence=high
GO	GO:0004364 (glutathione transferase activity)
KEGG	-
Pfam	PF00043 (GST_C); PF02798 (GST_N); PF13409 (GST_N_2); PF13410 (GST_C_2); PF13417 (GST_N_3); PF14497 (GST_C_3)
InterPro	-
eggNOG	-
NR	GeneID:131011827

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.40000	`XP_057795673.1`
2	Mitochondrion membrane	线粒体膜	0.40000	`XP_057795673.1`
3	Mitochondrion outer membrane	线粒体外膜	0.40000	`XP_057795673.1`
4	Cytoplasm	细胞质	0.20000	`XP_057795673.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057795673.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48038602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B85
`Chr2:48038635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B33,B80,C20,C60
`Chr2:48039481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795673.1

267 aa

134

267

GST_N

GST_N_3

GST_N_2

GST_C_3

GST_C_2

GST_C

PF02798 GST_N 1-74 aa PF13417 GST_N_3 3-75 aa PF13409 GST_N_2 12-74 aa PF14497 GST_C_3 149-233 aa PF13410 GST_C_2 160-224 aa PF00043 GST_C 160-232 aa

XP_057795674.1

267 aa

134

267

GST_N

GST_N_3

GST_N_2

GST_C_3

GST_C_2

GST_C

PF02798 GST_N 1-74 aa PF13417 GST_N_3 3-75 aa PF13409 GST_N_2 12-74 aa PF14497 GST_C_3 149-233 aa PF13410 GST_C_2 160-224 aa PF00043 GST_C 160-232 aa

XP_057795675.1

267 aa

134

267

GST_N

GST_N_3

GST_N_2

GST_C_3

GST_C_2

GST_C

PF02798 GST_N 1-74 aa PF13417 GST_N_3 3-75 aa PF13409 GST_N_2 12-74 aa PF14497 GST_C_3 149-233 aa PF13410 GST_C_2 160-224 aa PF00043 GST_C 160-232 aa

XP_057795676.1

267 aa

134

267

GST_N

GST_N_3

GST_N_2

GST_C_3

GST_C_2

GST_C

PF02798 GST_N 1-74 aa PF13417 GST_N_3 3-75 aa PF13409 GST_N_2 12-74 aa PF14497 GST_C_3 149-233 aa PF13410 GST_C_2 160-224 aa PF00043 GST_C 160-232 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795673.1`	Pfam	`PF02798`	GST_N	Domain	1	74	1.2e-11	45.5	Glutathione S-transferase, N-terminal domain
`XP_057795673.1`	Pfam	`PF13417`	GST_N_3	Domain	3	75	3.6e-12	47.1	Glutathione S-transferase, N-terminal domain
`XP_057795673.1`	Pfam	`PF13409`	GST_N_2	Domain	12	74	1.1e-10	42.7	Glutathione S-transferase, N-terminal domain
`XP_057795673.1`	Pfam	`PF14497`	GST_C_3	Domain	149	233	1e-07	32.8	Glutathione S-transferase, C-terminal domain
`XP_057795673.1`	Pfam	`PF13410`	GST_C_2	Domain	160	224	2.1e-10	41.3	Glutathione S-transferase, C-terminal domain
`XP_057795673.1`	Pfam	`PF00043`	GST_C	Domain	160	232	2.2e-10	41.4	Glutathione S-transferase, C-terminal domain
`XP_057795674.1`	Pfam	`PF02798`	GST_N	Domain	1	74	1.2e-11	45.5	Glutathione S-transferase, N-terminal domain
`XP_057795674.1`	Pfam	`PF13417`	GST_N_3	Domain	3	75	3.6e-12	47.1	Glutathione S-transferase, N-terminal domain
`XP_057795674.1`	Pfam	`PF13409`	GST_N_2	Domain	12	74	1.1e-10	42.7	Glutathione S-transferase, N-terminal domain
`XP_057795674.1`	Pfam	`PF14497`	GST_C_3	Domain	149	233	1e-07	32.8	Glutathione S-transferase, C-terminal domain
`XP_057795674.1`	Pfam	`PF13410`	GST_C_2	Domain	160	224	2.1e-10	41.3	Glutathione S-transferase, C-terminal domain
`XP_057795674.1`	Pfam	`PF00043`	GST_C	Domain	160	232	2.2e-10	41.4	Glutathione S-transferase, C-terminal domain
`XP_057795675.1`	Pfam	`PF02798`	GST_N	Domain	1	74	1.2e-11	45.5	Glutathione S-transferase, N-terminal domain
`XP_057795675.1`	Pfam	`PF13417`	GST_N_3	Domain	3	75	3.6e-12	47.1	Glutathione S-transferase, N-terminal domain
`XP_057795675.1`	Pfam	`PF13409`	GST_N_2	Domain	12	74	1.1e-10	42.7	Glutathione S-transferase, N-terminal domain
`XP_057795675.1`	Pfam	`PF14497`	GST_C_3	Domain	149	233	1e-07	32.8	Glutathione S-transferase, C-terminal domain
`XP_057795675.1`	Pfam	`PF13410`	GST_C_2	Domain	160	224	2.1e-10	41.3	Glutathione S-transferase, C-terminal domain
`XP_057795675.1`	Pfam	`PF00043`	GST_C	Domain	160	232	2.2e-10	41.4	Glutathione S-transferase, C-terminal domain
`XP_057795676.1`	Pfam	`PF02798`	GST_N	Domain	1	74	1.2e-11	45.5	Glutathione S-transferase, N-terminal domain
`XP_057795676.1`	Pfam	`PF13417`	GST_N_3	Domain	3	75	3.6e-12	47.1	Glutathione S-transferase, N-terminal domain
`XP_057795676.1`	Pfam	`PF13409`	GST_N_2	Domain	12	74	1.1e-10	42.7	Glutathione S-transferase, N-terminal domain
`XP_057795676.1`	Pfam	`PF14497`	GST_C_3	Domain	149	233	1e-07	32.8	Glutathione S-transferase, C-terminal domain
`XP_057795676.1`	Pfam	`PF13410`	GST_C_2	Domain	160	224	2.1e-10	41.3	Glutathione S-transferase, C-terminal domain
`XP_057795676.1`	Pfam	`PF00043`	GST_C	Domain	160	232	2.2e-10	41.4	Glutathione S-transferase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939693.1
ATTTAAATTAAAATATCAAGACTCAATCAATACACAATATACTAGTATTAGTTATTCATCATTCTGTCCTTTTCCATGAATGTGAGATTCTCAGCTACTAACACCCGAAACTCTCCTCGTCCGTCTGTGCGCCTGCGCTGGCATAATTCTTCCAAAACCTTTTTCCCCACTCTTTTTTCTGTTTCTTACTCTGTTAAAGATAGAGAGAGAGACCCTTTGAGCTTTTGATAAAAAAAAGGGTATCTTTTTATTCTAATTCC...

XM_057939691.1
TCAATACACAATATACTAGTATTAGTTATTCATCATTCTGTCCTTTTCCATGAATGTGAGATTCTCAGCTACTAACACCCGAAACTCTCCTCGTCCGTCTGTGCGCCTGCGCTGGCATAATTCTTCCAAAACCTTTTTCCCCACTCTTTTTTCTGTTTCTTACTCTGTTAAAGATAGAGAGAGAGACCCTTTGAGCTTTTGATAAAAAAAAGGGTATCTTTTTATTCTAATTCCACGTGTGCCCCAATCTCTCTAAAACC...

CDS

4 records

下载 CDS FASTA

LOC131011827
ATGCAGCTATATCATCATCCATATTCCTTGGACAGCCAGAAAGTGAGGCTCGTGTTGGAGGAGAAGAACATCGATTACACATCATTCCATGTCAATCCGATCACGGGCAAGAATTTTGAGTCTAGTTTCTTCAAGAAGAACCCCTCTGCAAAACTTCCTGTTTTCCAGAATGGTTCCCACATCTTGTTCGACACTATTGAAATCATCCAGTACATAGAGAGAATTGCGATGGTCTCTTGTGGCGGAGAGGAATCGAGTCT...

Protein

4 records

下载 Protein FASTA

XP_057795673.1
MQLYHHPYSLDSQKVRLVLEEKNIDYTSFHVNPITGKNFESSFFKKNPSAKLPVFQNGSHILFDTIEIIQYIERIAMVSCGGEESSLSSGEVVEWIYKIQQWNPKLFTLSHIPPKYRLTVSKFLRRVIIARMAEFPELASAYHRKLKEAYDTEDKLKDPETLRRSEEHLERILDEAEEKLSETTYLLGEEFTLADVVFIPLLSRLALLNLEEKYVATRPNLADYWNLVQKRPSYRKVIGKHFDGWRRHNTLFRTWCFVQI...

XP_057795674.1
MQLYHHPYSLDSQKVRLVLEEKNIDYTSFHVNPITGKNFESSFFKKNPSAKLPVFQNGSHILFDTIEIIQYIERIAMVSCGGEESSLSSGEVVEWIYKIQQWNPKLFTLSHIPPKYRLTVSKFLRRVIIARMAEFPELASAYHRKLKEAYDTEDKLKDPETLRRSEEHLERILDEAEEKLSETTYLLGEEFTLADVVFIPLLSRLALLNLEEKYVATRPNLADYWNLVQKRPSYRKVIGKHFDGWRRHNTLFRTWCFVQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器