Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002797`

染色体: Chr02 坐标: 48068509-48076124 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002797`
名称	SmilChr02G002797
描述	protein EMBRYO SAC DEVELOPMENT ARREST 30
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48068509 - 48076124 / `+`

ID 对照

NCBI Gene ID	`LOC131011828`
GeneID	`131011828`
locus_tag	`-`
NCBI Name	`LOC131011828`
原始查询	`LOC131011828`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein EMBRYO SAC DEVELOPMENT ARREST 30
产物	protein EMBRYO SAC DEVELOPMENT ARREST 30
Arabidopsis	`AT3G03810` (EDA30) O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821131] identity=61.1; qcov=0.996; evalue=0; confidence=high
Rice	`Os05g0132500` - identity=59.5; qcov=0.996; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005794 (Golgi apparatus); GO:0009507 (chloroplast)
KEGG	-
Pfam	PF10250 (O-FucT)
InterPro	-
eggNOG	-
NR	GeneID:131011828

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057795677.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057795677.1`
3	Nucleus	细胞核	0.00000	`XP_057795677.1`
4	Chromosome	染色体	0.00000	`XP_057795677.1`
5	Centromere	着丝粒	0.00000	`XP_057795677.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48071939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:48072008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C8
`Chr2:48074675`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C24
`Chr2:48074675`	`TC`	`T`	1bp_deletion	CDS_variant	1	C24
`Chr2:48074694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:48074770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr2:48074800`	`AG`	`*`	1bp_deletion	CDS_variant	1	B101
`Chr2:48074982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:48075588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:48075678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795677.1

667 aa

334

667

O-FucT

PF10250 O-FucT 102-405 aa

XP_057795678.1

667 aa

334

667

O-FucT

PF10250 O-FucT 102-405 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795677.1`	Pfam	`PF10250`	O-FucT	Family	102	405	2e-66	225.7	GDP-fucose protein O-fucosyltransferase
`XP_057795678.1`	Pfam	`PF10250`	O-FucT	Family	102	405	2e-66	225.7	GDP-fucose protein O-fucosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939694.1
CAATTTTCTTTTACGTCCAAAAGCTTAGCATATTTGAAATAACCAGTCGATTGTAATTTGAAGATATACAAATATACACACCATGCCAACTCATAAAATCACAAATTTATTTGAAAACCCCTATAAAACGACTAAAGGAGAATGTATGATTATTTTTTTTCCTCCAAAAACACAAAAAATCAGATCTAAAATCGTGAAAATGAAAACTAAATTTATAAAAATATTCTAAATAAATTAATAGAAAATCCACTGATATAAAA...

XM_057939695.1
CAATTTTCTTTTACGTCCAAAAGCTTAGCATATTTGAAATAACCAGTCGATTGTAATTTGAAGATATACAAATATACACACCATGCCAACTCATAAAATCACAAATTTATTTGAAAACCCCTATAAAACGACTAAAGGAGAATGTATGATTATTTTTTTTCCTCCAAAAACACAAAAAATCAGATCTAAAATCGTGAAAATGAAAACTAAATTTATAAAAATATTCTAAATAAATTAATAGAAAATCCACTGATATAAAA...

CDS

2 records

下载 CDS FASTA

LOC131011828
ATGGCGTGGTCAGAAAGGATTAAAATGAAATCCAAAATAAAATGGGCGGCGCTTGGGGGACTAGTGTTATCATTTACTTCAATATTGGTGCATTTGTTTCTTGCAAAATCGAGTGCCAGTCTTGTGCTGTACAGTGCAGTCACTGCTTTCACTGAGGATTTGAATCACTTTGATGGTCCCATCAGAAAGGGTGCTGGTTATAGAAGGTTATGGGGAAAAGTCAATGCTTTGGAGCACTTACAGCCGTATGCAAACCCAAG...

Protein

2 records

下载 Protein FASTA

XP_057795677.1
MAWSERIKMKSKIKWAALGGLVLSFTSILVHLFLAKSSASLVLYSAVTAFTEDLNHFDGPIRKGAGYRRLWGKVNALEHLQPYANPRSTPYLVPNKQNHGFIYAKIHGGFEKIRTSICDLVAVARLLNATLVIPEIQQSLQSKGVSSNFKSFSYLYDEEHFMEALASDVIVVKSLPSDLMEGRKQKQYPIFKPKGSSSPKFYLQEVLPKLKSAKVIGLILNDGGCLQAILPSSLVEYQRLRCRVAFHVLRFRAQILEVAY...

XP_057795678.1
MAWSERIKMKSKIKWAALGGLVLSFTSILVHLFLAKSSASLVLYSAVTAFTEDLNHFDGPIRKGAGYRRLWGKVNALEHLQPYANPRSTPYLVPNKQNHGFIYAKIHGGFEKIRTSICDLVAVARLLNATLVIPEIQQSLQSKGVSSNFKSFSYLYDEEHFMEALASDVIVVKSLPSDLMEGRKQKQYPIFKPKGSSSPKFYLQEVLPKLKSAKVIGLILNDGGCLQAILPSSLVEYQRLRCRVAFHVLRFRAQILEVAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器