当前解析结果
SmilChr02G002806| 统一新 Gene ID | SmilChr02G002806 |
|---|---|
| 名称 | SmilChr02G002806 |
| 描述 | NAD kinase 2, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48125601 - 48132418 / - |
| NCBI Gene ID | LOC131011834 |
|---|---|
| GeneID | 131011834 |
| locus_tag | - |
| NCBI Name | LOC131011834 |
| 原始查询 | LOC131011834 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD kinase 2, chloroplastic-like |
| 产物 | NAD kinase 2%2C chloroplastic-like |
| Arabidopsis | AT1G21640 (NADK2)NAD kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838766] identity=61.7; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0191400- identity=59.8; qcov=0.972; evalue=0; confidence=high |
| GO | GO:0003951 (NAD+ kinase activity); GO:0006741 (NADP+ biosynthetic process); GO:0019674 (NAD+ metabolic process) |
| KEGG | smil00760 (Nicotinate and nicotinamide metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01513 (NAD_kinase); PF20143 (NAD_kinase_C); PF22741 (PTP-NADK); PF22785 (Tc-R-P) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011834 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057795693.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057795693.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795693.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795693.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795693.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48125851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C74 |
Chr2:48127242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B54,B80,C44 |
Chr2:48127902 |
C |
CCA |
2bp_insertion | frameshift_variant | 2 | C29,C65 |
Chr2:48127902 |
C |
CCA |
2bp_insertion | CDS_variant | 2 | C29,C65 |
Chr2:48127942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C6 |
Chr2:48129933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:48130047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C6 |
Chr2:48130267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B82,C74 |
Chr2:48130286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B95,C5,C83 |
Chr2:48130459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B74,C43,D9 |
Chr2:48130757 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C78 |
Chr2:48130757 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795693.1PF22741
PTP-NADK 255-415 aa
PF22785
Tc-R-P 289-383 aa
PF01513
NAD_kinase 721-831 aa
PF20143
NAD_kinase_C 865-991 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795693.1 |
Pfam | PF22741 |
PTP-NADK | Domain | 255 | 415 | 7.9e-62 | 208.2 | DSP-PTPase phosphatase fused to NAD+ Kinase |
XP_057795693.1 |
Pfam | PF22785 |
Tc-R-P | Domain | 289 | 383 | 3e-10 | 41.3 | Polymorphic toxin system, DSP-PTPase phosphatase |
XP_057795693.1 |
Pfam | PF01513 |
NAD_kinase | Domain | 721 | 831 | 2.2e-14 | 54.6 | ATP-NAD kinase N-terminal domain |
XP_057795693.1 |
Pfam | PF20143 |
NAD_kinase_C | Domain | 865 | 991 | 1.7e-35 | 122.2 | ATP-NAD kinase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。