Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002816`

染色体: Chr02 坐标: 48266258-48271735 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002816`
名称	SmilChr02G002816
描述	cyclin-A1-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48266258 - 48271735 / `-`

ID 对照

NCBI Gene ID	`LOC131011846`
GeneID	`131011846`
locus_tag	`-`
NCBI Name	`LOC131011846`
原始查询	`LOC131011846`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclin-A1-1
产物	cyclin-A1-1
Arabidopsis	`AT1G44110` (CYCA1;1) Cyclin A1;1 [Source:NCBI gene (formerly Entrezgene);Acc:841014] identity=61; qcov=0.972; evalue=0; confidence=high
Rice	`Os12g0298950` (CycA1) - identity=59.5; qcov=0.902; evalue=0; confidence=high
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131011846

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795702.1`
2	Chromosome	染色体	0.00000	`XP_057795702.1`
3	Centromere	着丝粒	0.00000	`XP_057795702.1`
4	Chromatin	染色质	0.00000	`XP_057795702.1`
5	Telomere	端粒	0.00000	`XP_057795702.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48268617`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	C86
`Chr2:48268617`	`AGC`	`A`	2bp_deletion	CDS_variant	1	C86
`Chr2:48268632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,A23,B78,C8,D4
`Chr2:48268843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B69,B71,B9,C62
`Chr2:48268850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C74,D10
`Chr2:48268879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B24,B85,C51
`Chr2:48268890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C34
`Chr2:48268930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B82
`Chr2:48268972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C5,C83
`Chr2:48270083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C65,C78
`Chr2:48270125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B24,C51
`Chr2:48270341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795702.1

522 aa

261

522

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 232-359 aa PF02984 Cyclin_C 361-430 aa

XP_057795703.1

498 aa

249

498

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 232-359 aa PF02984 Cyclin_C 361-481 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795702.1`	Pfam	`PF00134`	Cyclin_N	Domain	232	359	2.4e-49	167.0	Cyclin, N-terminal domain
`XP_057795702.1`	Pfam	`PF02984`	Cyclin_C	Domain	361	430	1.8e-18	67.4	Cyclin, C-terminal domain
`XP_057795703.1`	Pfam	`PF00134`	Cyclin_N	Domain	232	359	2.4e-49	167.0	Cyclin, N-terminal domain
`XP_057795703.1`	Pfam	`PF02984`	Cyclin_C	Domain	361	481	3.3e-37	127.8	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939719.1
CATCACATTCTCACTTCATTCGCATTTAACACTGCGTTTTAATTCTTTCTTTTTTTTCCGCTGCAATTAAAAAGCCCTGATTTTGTGTTGCATTCGAAAACACCTTCGTTTTTTACCCTTCGCCATTGCTTGTGGGGTCAATCAATGGCGAGTGCCGCGGGAGTGAGGAGGTCGACCACGTCGTCTCTGGCGAAGCGCCACGCTTCTGCCTCCGAGAGTATTGGGAAGGCCACGTCGTCGGCCGCCGCCACCAAGAAGCG...

XM_057939720.1
CACATTCTCACTTCATTCGCATTTAACACTGCGTTTTAATTCTTTCTTTTTTTTCCGCTGCAATTAAAAAGCCCTGATTTTGTGTTGCATTCGAAAACACCTTCGTTTTTTACCCTTCGCCATTGCTTGTGGGGTCAATCAATGGCGAGTGCCGCGGGAGTGAGGAGGTCGACCACGTCGTCTCTGGCGAAGCGCCACGCTTCTGCCTCCGAGAGTATTGGGAAGGCCACGTCGTCGGCCGCCGCCACCAAGAAGCGTCC...

CDS

2 records

下载 CDS FASTA

LOC131011846
ATGGCGAGTGCCGCGGGAGTGAGGAGGTCGACCACGTCGTCTCTGGCGAAGCGCCACGCTTCTGCCTCCGAGAGTATTGGGAAGGCCACGTCGTCGGCCGCCGCCACCAAGAAGCGTCCGGCGCTTGCAAACGTCACTAACCAGAGGCATGGATCCGGTTCTTTCAATTCGGGCCGGGTTTCTGCGCCCGAATCCTCCAAAATTGTGCCATGTACCACCAAAATCGTGAGCATAAAGAAGGGTTCTTCGATTTCCTCAAA...

Protein

2 records

下载 Protein FASTA

XP_057795702.1
MASAAGVRRSTTSSLAKRHASASESIGKATSSAAATKKRPALANVTNQRHGSGSFNSGRVSAPESSKIVPCTTKIVSIKKGSSISSNASFSGAFLPAATTSMKQNTVAAGRSSSLTKSDVAIPKAVVADSISYSMNLSPDKSDSLSVSMDESMSTCDSLKSPDVEYVDNNDLAAVDSIERRASNMLCIPEPMDIEGGICKRDAVAAMEAGDKIVEVDDDLEDPQLCATIACDIYKHLRASEAKKRPSASFMERVQKDINA...

XP_057795703.1
MASAAGVRRSTTSSLAKRHASASESIGKATSSAAATKKRPALANVTNQRHGSGSFNSGRVSAPESSKIVPCTTKIVSIKKGSSISSNASFSGAFLPAATTSMKQNTVAAGRSSSLTKSDVAIPKAVVADSISYSMNLSPDKSDSLSVSMDESMSTCDSLKSPDVEYVDNNDLAAVDSIERRASNMLCIPEPMDIEGGICKRDAVAAMEAGDKIVEVDDDLEDPQLCATIACDIYKHLRASEAKKRPSASFMERVQKDINA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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