当前解析结果
SmilChr02G002818| 统一新 Gene ID | SmilChr02G002818 |
|---|---|
| 名称 | SmilChr02G002818 |
| 描述 | replication factor C subunit 2 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48282238 - 48285778 / + |
| NCBI Gene ID | LOC131011847 |
|---|---|
| GeneID | 131011847 |
| locus_tag | - |
| NCBI Name | LOC131011847 |
| 原始查询 | LOC131011847 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | replication factor C subunit 2 |
| 产物 | replication factor C subunit 2 |
| Arabidopsis | AT1G21690 (EMB1968)ATPase family associated with various cellular activities (AAA) [Source:NCBI gene (formerly Entrezgene);Acc:838771] identity=81.4; qcov=0.994; evalue=0; confidence=high |
| Rice | Os12g0176500 (RFC2)- identity=82.9; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0016887 (ATP hydrolysis activity) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF03215 (Rad17); PF08542 (Rep_fac_C); PF13177 (DNA_pol3_delta2); PF21960 (RCF1-5-like_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011847 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795704.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057795704.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057795704.1 |
| 4 | Nucleoplasm | 核质 | 0.80000 | XP_057795704.1 |
| 5 | Midbody | Midbody | 0.40000 | XP_057795704.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48282341 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,D4 |
Chr2:48282344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,C48,C87 |
Chr2:48282704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:48283441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,B71,B9,C17,C62 |
Chr2:48283459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr2:48283701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,C83 |
Chr2:48283767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,C74 |
Chr2:48284447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:48284966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C5,C83 |
Chr2:48285005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B54,B80,C44 |
Chr2:48285533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C5,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795704.1PF03215
Rad17 8-65 aa
PF13177
DNA_pol3_delta2 26-173 aa
PF00004
AAA 45-172 aa
PF21960
RCF1-5-like_lid 184-220 aa
PF08542
Rep_fac_C 239-324 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795704.1 |
Pfam | PF03215 |
Rad17 | Domain | 8 | 65 | 1.9e-06 | 28.7 | Rad17 P-loop domain |
XP_057795704.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 26 | 173 | 6.1e-12 | 46.5 | DNA polymerase III, delta subunit |
XP_057795704.1 |
Pfam | PF00004 |
AAA | Domain | 45 | 172 | 4.7e-18 | 66.6 | ATPase family associated with various cellular activities (AAA) |
XP_057795704.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 184 | 220 | 4.5e-07 | 30.4 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057795704.1 |
Pfam | PF08542 |
Rep_fac_C | Domain | 239 | 324 | 1.4e-22 | 80.5 | Replication factor C C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。