当前解析结果
SmilChr02G002834| 统一新 Gene ID | SmilChr02G002834 |
|---|---|
| 名称 | SmilChr02G002834 |
| 描述 | replication factor C subunit 3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48485441 - 48488603 / - |
| NCBI Gene ID | LOC131011861 |
|---|---|
| GeneID | 131011861 |
| locus_tag | - |
| NCBI Name | LOC131011861 |
| 原始查询 | LOC131011861 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | replication factor C subunit 3 |
| 产物 | replication factor C subunit 3 |
| Arabidopsis | AT1G77470 (RFC3)replication factor C subunit 3 [Source:NCBI gene (formerly Entrezgene);Acc:844083] identity=74.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0775200 (OsRFC3)- identity=80.6; qcov=0.907; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0016887 (ATP hydrolysis activity) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF03215 (Rad17); PF07728 (AAA_5); PF08542 (Rep_fac_C); PF13177 (DNA_pol3_delta2); PF21960 (RCF1-5-like_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011861 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795727.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057795727.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057795727.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795727.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795727.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48485621 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | A11,B78 |
Chr2:48485621 |
CT |
C |
1bp_deletion | CDS_variant | 2 | A11,B78 |
Chr2:48486311 |
TAC |
T |
2bp_deletion | frameshift_variant | 1 | B66 |
Chr2:48486311 |
TAC |
T |
2bp_deletion | CDS_variant | 1 | B66 |
Chr2:48488164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B17 |
Chr2:48488170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B31,C5 |
Chr2:48488213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr2:48488216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr2:48488308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795727.1PF03215
Rad17 38-111 aa
PF07728
AAA_5 76-167 aa
PF00004
AAA 77-199 aa
PF13177
DNA_pol3_delta2 119-200 aa
PF21960
RCF1-5-like_lid 208-247 aa
PF08542
Rep_fac_C 265-351 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795727.1 |
Pfam | PF03215 |
Rad17 | Domain | 38 | 111 | 7.9e-10 | 39.7 | Rad17 P-loop domain |
XP_057795727.1 |
Pfam | PF07728 |
AAA_5 | Domain | 76 | 167 | 4.3e-05 | 24.3 | AAA domain (dynein-related subfamily) |
XP_057795727.1 |
Pfam | PF00004 |
AAA | Domain | 77 | 199 | 8.2e-16 | 59.4 | ATPase family associated with various cellular activities (AAA) |
XP_057795727.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 119 | 200 | 3.8e-10 | 40.7 | DNA polymerase III, delta subunit |
XP_057795727.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 208 | 247 | 4.5e-07 | 30.4 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057795727.1 |
Pfam | PF08542 |
Rep_fac_C | Domain | 265 | 351 | 4e-22 | 79.1 | Replication factor C C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。