Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002857

染色体: Chr02 坐标: 48768678-48772095 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002857
名称SmilChr02G002857
描述BTB/POZ domain-containing protein At1g21780-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向48768678 - 48772095 / -

ID 对照

NCBI Gene IDLOC131011881
GeneID131011881
locus_tag-
NCBI NameLOC131011881
原始查询LOC131011881

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述BTB/POZ domain-containing protein At1g21780-like
产物BTB/POZ domain-containing protein At1g21780-like
ArabidopsisAT1G21780 (AT1G21780)
BTB/POZ domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838782]
identity=69.8; qcov=1; evalue=1.84e-175; confidence=high
RiceOs08g0103600
-
identity=65.5; qcov=0.877; evalue=1.4e-133; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF00651 (BTB)
InterPro-
eggNOG-
NRGeneID:131011881

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057795751.1
2 Cytosol 细胞质基质 1.00000 XP_057795751.1
3 Nucleus 细胞核 0.40000 XP_057795751.1
4 Chromosome 染色体 0.00000 XP_057795751.1
5 Centromere 着丝粒 0.00000 XP_057795751.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:48768986 C T EMS_canonical_SNV CDS_variant 1 B68
Chr2:48769132 C T EMS_canonical_SNV CDS_variant 1 C22
Chr2:48769361 G A EMS_canonical_SNV CDS_variant 1 C5
Chr2:48770788 G A EMS_canonical_SNV CDS_variant 1 B44
Chr2:48770874 G A EMS_canonical_SNV CDS_variant 1 B131
Chr2:48771105 T TGA 2bp_insertion frameshift_variant 7 A16,A5,B132,B32,B51,C30,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795751.1
367 aa
N
1
184
367
BTB
C
PF00651 BTB 194-298 aa
XP_057795752.1
365 aa
N
1
182
365
BTB
C
PF00651 BTB 192-296 aa
XP_057795753.1
362 aa
N
1
181
362
BTB
C
PF00651 BTB 189-293 aa
XP_057795754.1
360 aa
N
1
180
360
BTB
C
PF00651 BTB 187-291 aa
XP_057795755.1
334 aa
N
1
167
334
BTB
C
PF00651 BTB 161-265 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795751.1 Pfam PF00651 BTB Domain 194 298 2.7e-22 79.7 BTB/POZ domain
XP_057795752.1 Pfam PF00651 BTB Domain 192 296 2.7e-22 79.7 BTB/POZ domain
XP_057795753.1 Pfam PF00651 BTB Domain 189 293 2.6e-22 79.8 BTB/POZ domain
XP_057795754.1 Pfam PF00651 BTB Domain 187 291 2.6e-22 79.8 BTB/POZ domain
XP_057795755.1 Pfam PF00651 BTB Domain 161 265 2.1e-22 80.1 BTB/POZ domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057939772.1
GAATGACGGAGAGGGAGTGGTTGTGAGCGTGATTAAAGGCGGCGGCGCAGAGATCGGCGGCGAGGCCTAGCCCCCTCTTGCTGGGCGGCACATACGTATGAGTTATGTCCATTACTTTACTGCCCCTCATCTCGTATTCAAGCAATACAGCCAAAAAAGTCCACTTTTTCCCCCAAATCGGATCTCCCCTCACAAGCTAAAAGGCCTGTAACTATGCTTCATTAAATGAGGGGAGTGACTGACATATGCTTCCGTAAAAA...
XM_057939771.1
AATGACGGAGAGGGAGTGGTTGTGAGCGTGATTAAAGGCGGCGGCGCAGAGATCGGCGGCGAGGCCTAGCCCCCTCTTGCTGGGCGGCACATACGTATGAGTTATGTCCATTACTTTACTGCCCCTCATCTCGTATTCAAGTCAAAAACCCCTCACACACAGTGGAAGTCAAGTTTCCTCTCTCTCTCACACACAATGGCGGACACGAAAGTGGAGACGATAGCAAGGTTGGCGCAGTGGAAAATCGAGAGTTTCGGGCC...

CDS

5 records

下载 CDS FASTA
LOC131011881
ATGAGTTATGTCCATTACTTTACTGCCCCTCATCTCGTATTCAAGTCAAAAACCCCTCACACACAGTGGAAGTCAAGTTTCCTCTCTCTCTCACACACAATGGCGGACACGAAAGTGGAGACGATAGCAAGGTTGGCGCAGTGGAAAATCGAGAGTTTCGGGCCAACCAACCCGTACAAGAGATCCGACCCCTTCAAAATCGGCATTTGGAACTGGCATTTATCGGTGGAGAAAAACCGCTCCGTTTACATCAGGCTTTT...
LOC131011881
ATGAGTTATGTCCATTACTTTACTGCCCCTCATCTCGTATTCAAGTCAAAAACCCCTCACACACAGTGGAAGTCAAGTTTCCTCTCTCTCTCACACACAATGGCGGACACGAAAGTGGAGACGATAGCAAGGTTGGCGCAGTGGAAAATCGAGAGTTTCGGGCCAACCAACCCGTACAAGAGATCCGACCCCTTCAAAATCGGCATTTGGAACTGGCATTTATCGGTGGAGAAAAACCGCTCCGTTTACATCAGGCTTTT...

Protein

5 records

下载 Protein FASTA
XP_057795751.1
MSYVHYFTAPHLVFKSKTPHTQWKSSFLSLSHTMADTKVETIARLAQWKIESFGPTNPYKRSDPFKIGIWNWYLHLSVEKNRSVYIRLFPEPSRLSKEQPPLARFVIRVSTSASNRRPYVSPIHERLLRSSDDFACPIDINFQGRFVIDVEFLDLKICPLNPLELQGGEGSSIWPSDGLMQSQASQSTLRCLYRMLDEEIHADVTINLSDGPLRAHRAILSASSPVFLSMFQHDLKEKESSTIDILDMTSESCMALLRYL...
XP_057795752.1
MSYVHYFTAPHLVFKSKTPHTQWKSSFLSLSHTMADTKVETIARLAQWKIESFGPTNPYKRSDPFKIGIWNWHLSVEKNRSVYIRLFPEPSRLSKEQPPLARFVIRVSTSASNRRPYVSPIHERLLRSSDDFACPIDINFQGRFVIDVEFLDLKICPLNPLELQGGEGSSIWPSDGLMQSQASQSTLRCLYRMLDEEIHADVTINLSDGPLRAHRAILSASSPVFLSMFQHDLKEKESSTIDILDMTSESCMALLRYLYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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