当前解析结果
SmilChr02G002863| 统一新 Gene ID | SmilChr02G002863 |
|---|---|
| 名称 | SmilChr02G002863 |
| 描述 | long chain acyl-CoA synthetase 9, chloroplastic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48796898 - 48803092 / - |
| NCBI Gene ID | LOC131011888 |
|---|---|
| GeneID | 131011888 |
| locus_tag | - |
| NCBI Name | LOC131011888 |
| 原始查询 | LOC131011888 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | long chain acyl-CoA synthetase 9, chloroplastic |
| 产物 | long chain acyl-CoA synthetase 9%2C chloroplastic |
| Arabidopsis | AT1G77590 (LACS9)long chain acyl-CoA synthetase 9 [Source:NCBI gene (formerly Entrezgene);Acc:844094] identity=76; qcov=1; evalue=0; confidence=high |
| Rice | Os12g0168700 (LACS1)- identity=74; qcov=1; evalue=0; confidence=high |
| GO | GO:0004467 (long-chain fatty acid-CoA ligase activity); GO:0005783 (endoplasmic reticulum); GO:0016020 (membrane) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00501 (AMP-binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011888 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057795762.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057795762.1 |
| 3 | Peroxisome membrane | 过氧化物酶体膜 | 0.20000 | XP_057795762.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795762.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795762.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48797852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:48797991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr2:48798346 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B35 |
Chr2:48798557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:48798600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B74 |
Chr2:48798902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C30 |
Chr2:48799226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:48799307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:48799815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:48799864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:48800632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:48800690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,A5,B132,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795762.1PF00501
AMP-binding 100-519 aa
XP_057795763.1PF00501
AMP-binding 100-519 aa
XP_057795764.1PF00501
AMP-binding 100-519 aa
XP_057795765.1PF00501
AMP-binding 100-519 aa
XP_057795766.1PF00501
AMP-binding 100-519 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795762.1 |
Pfam | PF00501 |
AMP-binding | Family | 100 | 519 | 3.9e-81 | 273.5 | AMP-binding enzyme |
XP_057795763.1 |
Pfam | PF00501 |
AMP-binding | Family | 100 | 519 | 3.9e-81 | 273.5 | AMP-binding enzyme |
XP_057795764.1 |
Pfam | PF00501 |
AMP-binding | Family | 100 | 519 | 3.9e-81 | 273.5 | AMP-binding enzyme |
XP_057795765.1 |
Pfam | PF00501 |
AMP-binding | Family | 100 | 519 | 3.9e-81 | 273.5 | AMP-binding enzyme |
XP_057795766.1 |
Pfam | PF00501 |
AMP-binding | Family | 100 | 519 | 3.9e-81 | 273.5 | AMP-binding enzyme |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。