Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002872`

染色体: Chr02 坐标: 48957194-48963634 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002872`
名称	SmilChr02G002872
描述	increased DNA methylation 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48957194 - 48963634 / `-`

ID 对照

NCBI Gene ID	`LOC131011899`
GeneID	`131011899`
locus_tag	`-`
NCBI Name	`LOC131011899`
原始查询	`LOC131011899`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	increased DNA methylation 1-like
产物	increased DNA methylation 1-like
Arabidopsis	`AT5G36740` (AT5G36670) Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:833643] identity=41.1; qcov=0.876; evalue=5.06e-175; confidence=medium
Rice	`Os03g0747600` - identity=40.8; qcov=0.784; evalue=2.14e-156; confidence=medium
GO	GO:0003677 (DNA binding); GO:0003714 (transcription corepressor activity); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0045892 (negative regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00628 (PHD); PF16135 (TDBD); PF22970 (DUF7028); PF23209 (IDM1_C)
InterPro	-
eggNOG	-
NR	GeneID:131011899

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795781.1`
2	Chromosome	染色体	0.00000	`XP_057795781.1`
3	Centromere	着丝粒	0.00000	`XP_057795781.1`
4	Chromatin	染色质	0.00000	`XP_057795781.1`
5	Telomere	端粒	0.00000	`XP_057795781.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48957408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B30,B34,C26,C37
`Chr2:48957475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B42,B43,B70,C57
`Chr2:48957685`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B19
`Chr2:48957685`	`TG`	`T`	1bp_deletion	CDS_variant	1	B19
`Chr2:48957737`	`CAG`	`C`	2bp_deletion	frameshift_variant	1	C17
`Chr2:48957737`	`CAG`	`C`	2bp_deletion	CDS_variant	1	C17
`Chr2:48957842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B63,B81,C76
`Chr2:48959138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B92,C12
`Chr2:48961104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:48961706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:48962600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr2:48962873`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795781.1

955 aa

478

955

DUF7028

TDBD

PHD

IDM1_C

PF22970 DUF7028 273-331 aa PF16135 TDBD 453-503 aa PF00628 PHD 531-569 aa PF23209 IDM1_C 690-829 aa

XP_057795782.1

841 aa

420

841

DUF7028

TDBD

PHD

IDM1_C

PF22970 DUF7028 273-331 aa PF16135 TDBD 453-503 aa PF00628 PHD 531-569 aa PF23209 IDM1_C 690-829 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795781.1`	Pfam	`PF22970`	DUF7028	Domain	273	331	5.6e-07	30.1	Domain of unknown function (DUF7028)
`XP_057795781.1`	Pfam	`PF16135`	TDBD	Domain	453	503	9.3e-16	58.3	Tify domain binding domain
`XP_057795781.1`	Pfam	`PF00628`	PHD	Domain	531	569	2.2e-06	28.3	PHD-finger
`XP_057795781.1`	Pfam	`PF23209`	IDM1_C	Domain	690	829	1.2e-59	201.1	Increased DNA methylation 1, C-terminal domain
`XP_057795782.1`	Pfam	`PF22970`	DUF7028	Domain	273	331	4.1e-07	30.6	Domain of unknown function (DUF7028)
`XP_057795782.1`	Pfam	`PF16135`	TDBD	Domain	453	503	7.8e-16	58.5	Tify domain binding domain
`XP_057795782.1`	Pfam	`PF00628`	PHD	Domain	531	569	1.9e-06	28.5	PHD-finger
`XP_057795782.1`	Pfam	`PF23209`	IDM1_C	Domain	690	829	1e-59	201.4	Increased DNA methylation 1, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939798.1
GTAAATCGCTGTCCCTAAAATCCCCCATTACACTTTAAAAAAATACTAAACCCTGTCTGCCCCTCTCTCTCTCTGCAGAAGCTACAGCATATAGATACAGCTAATCTGTACGCATCGCCTCCGTTACATTTTTCTGCGCATATTTCCTCTGCTCCATTGGAAATAGTAAAAAATGTCGATTGAGGTGGGAGAAGGGAGCGGAGAAGTTGAAGATGAGTTGATTGATCTGAACAAGGAACCACCGGTTGAGAGGAAAAGAA...

XM_057939799.1
AATCCCCCATTACACTTTAAAAAAATACTAAACCCTGTCTGCCCCTCTCTCTCTCTGCAGAAGCTACAGCATATAGATACAGCTAATCTGTACGCATCGCCTCCGTTACATTTTTCTGCGCATATTTCCTCTGCTCCATTGGAAATAGTAAAAAATGTCGATTGAGGTGGGAGAAGGGAGCGGAGAAGTTGAAGATGAGTTGATTGATCTGAACAAGGAACCACCGGTTGAGAGGAAAAGAAAAAGGGCTGAGAAGAGTA...

CDS

2 records

下载 CDS FASTA

LOC131011899
ATGTCGATTGAGGTGGGAGAAGGGAGCGGAGAAGTTGAAGATGAGTTGATTGATCTGAACAAGGAACCACCGGTTGAGAGGAAAAGAAAAAGGGCTGAGAAGAGTAATACGAATCATAAGGGGAATGAGGGGGCTGATGGTCTGCCTAAAACTGGTAGGGTTTTGAGGTCAAGAACGGTTGCCATGAGTGATGGTGAAAAACAAGTGATTAAGATGGAAATAGTGAATATGGACGACAAGGACGAACCGCAAGTGCCGGT...

Protein

2 records

下载 Protein FASTA

XP_057795781.1
MSIEVGEGSGEVEDELIDLNKEPPVERKRKRAEKSNTNHKGNEGADGLPKTGRVLRSRTVAMSDGEKQVIKMEIVNMDDKDEPQVPVMESVGKKKATVSKKKGKKKGRRGRPPKTEIKCEVSLSSNQKKRRGRPPKEKVINGVSPSGNMKSSGNMKRARRGRPRKVDSECVAFSLDKKHLQQKKVDTRSNGGGRGRGRPSIAQKGERSLKAANEDVGLAIKNKNVKRGRERNGSGDRVQSKRIKVGTSDLTDGVVQQKKN...

XP_057795782.1
MSIEVGEGSGEVEDELIDLNKEPPVERKRKRAEKSNTNHKGNEGADGLPKTGRVLRSRTVAMSDGEKQVIKMEIVNMDDKDEPQVPVMESVGKKKATVSKKKGKKKGRRGRPPKTEIKCEVSLSSNQKKRRGRPPKEKVINGVSPSGNMKSSGNMKRARRGRPRKVDSECVAFSLDKKHLQQKKVDTRSNGGGRGRGRPSIAQKGERSLKAANEDVGLAIKNKNVKRGRERNGSGDRVQSKRIKVGTSDLTDGVVQQKKN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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